LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00026	ATGGGGAGAGGAAAGATTGAGATAAAAAGAATTGAAAATACAACAAATAGCCGTGGAAGGCTTTATGAGTATTCAAACAATAACATTAGGTCAACAATTGATAGGTACAAGAAAGCATGTTCAGATCATTCAAGCACCACAACTACAACTGAAATTAACGCTCAGTATTATCAGCAAGAATCTGCAAAATTGCGACAACAAATACAGATGCTGCAAAATTCTAACAGGCATTTGATGGGTGATGCTTTAAGCACATTGACTGTGAAAGAGCTTAAGCAGCTTGAGAACAGGCTTGAAAGAGGAATCACAAGAATTAGATCAAAGAAACATGAGATGCTATTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTTCGTACTAAGATAAGTGAAGTAGAAAGGCTTCCTCAAGTGAACATGGTTTCTGGACAAGAACTGAATGCAATTCAAGCATTAGCATCTCGTAATTTCTTCGATCCAAACATGATGGAAGATGGAACTTCCTACAATCAATCATCAGATAAGAAGATTCTTCATCTTGGGTGA	573	0.3647	MGRGKIEIKRIENTTNSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKISEVERLPQVNMVSGQELNAIQALASRNFFDPNMMEDGTSYNQSSDKKILHLG	190

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00026	190	Coils	Coil	91	111	-	-
	Vifa2g00026	190	ProSiteProfiles	K-box domain profile.	54	144	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vifa2g00026	190	ProSiteProfiles	MADS-box domain profile.	1	16	IPR002100	GO:0003677\|GO:0046983
	Vifa2g00026	190	SUPERFAMILY	SRF-like	2	47	IPR036879	GO:0003677\|GO:0046983
	Vifa2g00026	190	Pfam	K-box region	51	138	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vifa2g00026	190	Coils	Coil	54	74	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00026	Vifa-Chr2	1624765	1632526	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g00026	1	190	MADS-box Gene Family	AT4G09960	60.000	5.47e-87	254

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00026	K09264		-	gmx:100301905	324.709

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