Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00026 ATGGGGAGAGGAAAGATTGAGATAAAAAGAATTGAAAATACAACAAATAGCCGTGGAAGGCTTTATGAGTATTCAAACAATAACATTAGGTCAACAATTGATAGGTACAAGAAAGCATGTTCAGATCATTCAAGCACCACAACTACAACTGAAATTAACGCTCAGTATTATCAGCAAGAATCTGCAAAATTGCGACAACAAATACAGATGCTGCAAAATTCTAACAGGCATTTGATGGGTGATGCTTTAAGCACATTGACTGTGAAAGAGCTTAAGCAGCTTGAGAACAGGCTTGAAAGAGGAATCACAAGAATTAGATCAAAGAAACATGAGATGCTATTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTTCGTACTAAGATAAGTGAAGTAGAAAGGCTTCCTCAAGTGAACATGGTTTCTGGACAAGAACTGAATGCAATTCAAGCATTAGCATCTCGTAATTTCTTCGATCCAAACATGATGGAAGATGGAACTTCCTACAATCAATCATCAGATAAGAAGATTCTTCATCTTGGGTGA 573 0.3647 MGRGKIEIKRIENTTNSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKISEVERLPQVNMVSGQELNAIQALASRNFFDPNMMEDGTSYNQSSDKKILHLG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00026 190 Coils Coil 91 111 - -
Vifa2g00026 190 ProSiteProfiles K-box domain profile. 54 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa2g00026 190 ProSiteProfiles MADS-box domain profile. 1 16 IPR002100 GO:0003677|GO:0046983
Vifa2g00026 190 SUPERFAMILY SRF-like 2 47 IPR036879 GO:0003677|GO:0046983
Vifa2g00026 190 Pfam K-box region 51 138 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa2g00026 190 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00026 Vifa-Chr2 1624765 1632526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00026 1 190 MADS-box Gene Family AT4G09960 60.000 5.47e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00026 K09264 - gmx:100301905 324.709