Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00021 ATGGCAAATACAATGCACTCTCACCGCTCATCCTGGCCGGAGAAGGAGTCTAAACACTTGATGAAAGTCATACTTCCCTCACCTGTTCATTCCAAACAAATCAGGATTCCAGATGAGTTCATATCAAGATTTGGCAATGAACTCAACACTCTTGTTACCCTGACTCTTCCAGATGGTTGTCAATGGGATATACAACTCAACAAATGCGACAACAATGCCGTTTTCCTTTGCAACAAATGGGAAGAGTTCTCACAACACTATTCTCTCCGTTATGGTTACTATTTAGATTTCAACTATCAAGGAAATTCAAACTTCAATGTTGTTATATATGATACAACTTGTCTTGAAATTTCATATCCCAATGAATACAACCCAAAAAACCCTTGTTTTCGCTCTAAATCCTTCAGCGGTCGCTATGCGTATATTAGTGCTGATTTTGCTTCAAAATATCTCAAGCTAAATGTTCCTATCAAACTCCAAAATTCTCAAGGAAAGCAGTGGCAAGTTTCTTGTACAACGCATAGAGTGAATTCATCGGCAATGCGAATATCTGCTGGGTTCCGTAAATTTGTGAAGGAAAACAATTTATCAGAAGGAGTTAGTTATGTATTTGAGCTGATAAAAAAAGAGCCTGTTCCTGTGCTACTAGTTACACAAGTTAACAAGACTCCCCGGGGAAGGCATGTACTGTCTGGGAAGGAAAAGCATTTTAAGAAGGCCATACTTCCCTCGCCCATTCATGAAAAACAAATAAGAATTCCGAATGAATTTGTAACAAGATTTGGGAAAGAACTCGGAGATGTTGCTGAAATTACTGTGCCAGATGGTTGTGTCTGGGAAATGAAACTTAAGAAAAGGAACGAAAACATTTACTTAAGCACCAAATGGCAAGAGTTTGCGAAACACTATTCATTAGAATATGGTTGCTACCTGTCATTCAAATATGAAGGGAAATCAAAGTTTAGTGTTGTAATATTTGATGCAACTTCTGTTGAGATATGTTATCCATGTGCTAGTGCTAGGAAAATGTCTGATGGGAAACACGCTTACCAAAGAGTTGAGGTTGAAACAAGTGAGAGTCACGGGAAACATGCTTACCAAAGAGTTGAGGTTGCTGCCCATGAATTCAACCCAGAAAACCCTTTTTTTCGTACAAAAATCAATAAAGGCAGATATCCGTACGCTCCCTCTCATTTTGCTAAAAAGTATTTGAAGCCAGATGTTCCTATCAAACTCCAAAATGCTGATGGTAAGCAATGGGAAGTTTCTTGTGCATTCAATATTCCAAAATTTCCTGGGGCACTGCGAATATTGAAGGGATATTTTGAATTTCATAGAGACAACAATCTCTCTGAGGGAGATCATTGTGTGTTTGAGCTGATCAAGCAGATGCCGGTTGTGCTAAAAGTCACAATGTTTCGCGCGCTTCACTTTCCCGATTAA 1443 0.3888 MANTMHSHRSSWPEKESKHLMKVILPSPVHSKQIRIPDEFISRFGNELNTLVTLTLPDGCQWDIQLNKCDNNAVFLCNKWEEFSQHYSLRYGYYLDFNYQGNSNFNVVIYDTTCLEISYPNEYNPKNPCFRSKSFSGRYAYISADFASKYLKLNVPIKLQNSQGKQWQVSCTTHRVNSSAMRISAGFRKFVKENNLSEGVSYVFELIKKEPVPVLLVTQVNKTPRGRHVLSGKEKHFKKAILPSPIHEKQIRIPNEFVTRFGKELGDVAEITVPDGCVWEMKLKKRNENIYLSTKWQEFAKHYSLEYGCYLSFKYEGKSKFSVVIFDATSVEICYPCASARKMSDGKHAYQRVEVETSESHGKHAYQRVEVAAHEFNPENPFFRTKINKGRYPYAPSHFAKKYLKPDVPIKLQNADGKQWEVSCAFNIPKFPGALRILKGYFEFHRDNNLSEGDHCVFELIKQMPVVLKVTMFRALHFPD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00021 480 Gene3D - 11 114 IPR015300 -
Vifa2g00021 480 Gene3D - 229 330 IPR015300 -
Vifa2g00021 480 CDD B3_DNA 141 217 IPR003340 GO:0003677
Vifa2g00021 480 SUPERFAMILY DNA-binding pseudobarrel domain 123 215 IPR015300 -
Vifa2g00021 480 SUPERFAMILY DNA-binding pseudobarrel domain 231 328 IPR015300 -
Vifa2g00021 480 ProSiteProfiles B3 DNA-binding domain profile. 236 329 IPR003340 GO:0003677
Vifa2g00021 480 SUPERFAMILY DNA-binding pseudobarrel domain 376 474 IPR015300 -
Vifa2g00021 480 ProSiteProfiles B3 DNA-binding domain profile. 410 476 IPR003340 GO:0003677
Vifa2g00021 480 Pfam B3 DNA binding domain 394 474 IPR003340 GO:0003677
Vifa2g00021 480 Pfam B3 DNA binding domain 131 211 IPR003340 GO:0003677
Vifa2g00021 480 Pfam B3 DNA binding domain 239 328 IPR003340 GO:0003677
Vifa2g00021 480 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Vifa2g00021 480 ProSiteProfiles B3 DNA-binding domain profile. 19 113 IPR003340 GO:0003677
Vifa2g00021 480 PANTHER B3 DOMAIN-CONTAINING 232 463 - -
Vifa2g00021 480 SMART B3_2 382 476 IPR003340 GO:0003677
Vifa2g00021 480 SMART B3_2 237 329 IPR003340 GO:0003677
Vifa2g00021 480 SMART B3_2 129 221 IPR003340 GO:0003677
Vifa2g00021 480 SMART B3_2 20 113 IPR003340 GO:0003677
Vifa2g00021 480 CDD B3_DNA 396 474 IPR003340 GO:0003677
Vifa2g00021 480 ProSiteProfiles B3 DNA-binding domain profile. 157 220 IPR003340 GO:0003677
Vifa2g00021 480 Gene3D - 117 225 IPR015300 -
Vifa2g00021 480 Gene3D - 362 478 IPR015300 -
Vifa2g00021 480 SUPERFAMILY DNA-binding pseudobarrel domain 16 113 IPR015300 -
Vifa2g00021 480 CDD B3_DNA 235 327 IPR003340 GO:0003677
Vifa2g00021 480 CDD B3_DNA 18 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00021 Vifa-Chr2 1105142 1106906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00021 367 474 B3 DNA Binding Superfamily AT3G18990 43.860 1.03e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g00021 B3 1.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00021 - - psat:127128837 733.791