Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00020 ATGCGTTTTCTTTGCGTGTCTTGTTCTCCAAACTCAGATTCACAGTCTCTCTCGTCACCTCGATCTAACTCCGTCTTTCAATTTGATTTCAACAGCTCTGGCACCGCGACTAAGAGAACCAAGAAGGGTGGTATTGTTGGCAAATACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTCAGTCAGCACAGTAAATTCTTCTGCGAGTTTTGTGGAAAGTATGCTGTTAAGAGAAAGGCTGTTGGTATTTGTGGGCTGCAAAGATTGTGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAATATTGCCAGTGCTGTGACTGTTCGGAGTACCATCTGAAGGTTGAGGGAGCAGACTGA 378 0.455 MRFLCVSCSPNSDSQSLSSPRSNSVFQFDFNSSGTATKRTKKGGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGICGLQRLWEGQGWWCLHFEYCQCCDCSEYHLKVEGAD 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00020 125 PANTHER ZGC:171772 31 92 - -
Vifa2g00020 125 SUPERFAMILY Zn-binding ribosomal proteins 45 89 IPR011332 GO:0006412
Vifa2g00020 125 Gene3D - 36 102 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vifa2g00020 125 Pfam Ribosomal L37ae protein family 39 90 IPR002674 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00020 Vifa-Chr2 1091611 1094418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00020 38 91 Cytoplasmic Ribosomal Protein Gene Family AT3G60245 90.741 1.24e-28 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00020 K02921 - lsv:111898551 115.161