Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00010 ATGGATGCAAATCTCCTCCTTCTTATCACGTTATATACTTTTCCAATACATCCTCACGCGCTGTTAATTTGGATCATAGAAATGCAAAGTTCGAATAGTGTACCAAACTTGAGAGACCACTCACAATATGAACAAACATTTTCATTACCTCCTATAAATAAAATGAGTGAATCCTATTTAGATGGATTATTATCTGAATTAGGAGGAATGAGGCTAAATCAACGTACGTTATCGGATCCGCACCAGCAGCAGGATGTACCTTATTGGTTGAATGATCTCCTTGACGACGACGACGAGCCTGAACAAGAAGAGAAACTTGCTAATTGTGTAAGCAGAAGTCATAGAAGATCATCGAGTGACTCAATAGCATTCTTAAATAATAAAAATATTCTTCTTCAAGATCCTGATAGGAATATTAATGTACCAAACCCACAACAACAACAACAACAACAACATCCTAGAATTGATCCTTCAAAACGCCTCAGAAGGCATTCAGCTCAACAGTACCGAGCGAGGAAAGTTCAATACATTGGGGAACTAGAAACAAGTGTTCAATCTTTACAGGCAGAAGGATATCAAGTTTCGGCAGAGCTTGAATTTCTTGATCAGCAAAACCTCATATTAGGTATGGAGAACAGGGCCCTCAAGCAACGTTTGGACAGTTTATCTCAAGAACACTTCATTAAATGCTTGGAGCAGGAAGTGCTTGAGAAAGAAATCTCAAGGCTTAGAAATATTTATCAACAACAACAACACAGGCAGCAGCAGCAGCAAAAACACAATGGTAGAAATCGACCTAAACGTCAAGATATTGATTCGTCAATTGCCAAACTCTCTTTGAAGATTAAGGGAATTGAGTCATCACAGAAAACCATATAG 879 0.3823 MDANLLLLITLYTFPIHPHALLIWIIEMQSSNSVPNLRDHSQYEQTFSLPPINKMSESYLDGLLSELGGMRLNQRTLSDPHQQQDVPYWLNDLLDDDDEPEQEEKLANCVSRSHRRSSSDSIAFLNNKNILLQDPDRNINVPNPQQQQQQQHPRIDPSKRLRRHSAQQYRARKVQYIGELETSVQSLQAEGYQVSAELEFLDQQNLILGMENRALKQRLDSLSQEHFIKCLEQEVLEKEISRLRNIYQQQQHRQQQQQKHNGRNRPKRQDIDSSIAKLSLKIKGIESSQKTI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00010 292 CDD bZIP_plant_RF2 162 205 IPR044759 GO:0003700|GO:0006355
Vifa2g00010 292 MobiDBLite consensus disorder prediction 247 271 - -
Vifa2g00010 292 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 51 139 IPR044797 -
Vifa2g00010 292 MobiDBLite consensus disorder prediction 134 154 - -
Vifa2g00010 292 Gene3D - 157 228 - -
Vifa2g00010 292 MobiDBLite consensus disorder prediction 134 167 - -
Vifa2g00010 292 SUPERFAMILY Leucine zipper domain 162 213 IPR046347 GO:0003700|GO:0006355
Vifa2g00010 292 SMART brlzneu 156 214 IPR004827 GO:0003700|GO:0006355
Vifa2g00010 292 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00010 Vifa-Chr2 272290 273588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00010 155 229 bZIP Transcription Factor Family AT2G42380 50.633 6.99e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00010 - - tpra:123914043 284.648