Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10996 ATGGACAATGCTCTAGGAGTGCAAGTGAGAGTTTCAAACGATTTAGGAAATAATATGGACTTAACCGTTCATTGTAAATCTGGAGATGATGATCTAGGCCCGCATCTTATTCGCCCTAAGGGAAGTTATAGCATTAGCTTTAACACTAATTTTTTTGGAGGAACATTATTCTTCTGTTCGTTTAAATGGGATAAAAATTTACGTCATTTTGATATATACAAACAAAGAAGAGATTATAGGAAAGGTGATTATTTCGACTATTTTGTAAAACAAGCTGGACCATGTTTGGCTAGTACAACTGGTCCTGTTTATTTTTTGAAAAGAATAACACATGCTCCTATTTGTTATTCATGGAATGCTTAA 363 0.3361 MDNALGVQVRVSNDLGNNMDLTVHCKSGDDDLGPHLIRPKGSYSISFNTNFFGGTLFFCSFKWDKNLRHFDIYKQRRDYRKGDYFDYFVKQAGPCLASTTGPVYFLKRITHAPICYSWNA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10996 120 Pfam Plant self-incompatibility protein S1 8 118 IPR010264 -
Vifa1g10996 120 PANTHER - 8 98 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10996 Vifa-Chr1 1852451529 1852451891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10996 9 120 Carbohydrate Esterase AT3G16970 37.931 2.55e-22 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10996 - - mtr:25483709 102.834