Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10988 ATGGCAGATGTTGAACCCGAGGTCGCCGCACAAGGAGTGCCAAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGCGTTGATCTTGATGCTCTCTTGGACATGTCCACTGATGAACTCGTCAAGCTATTCTCTGCTCGTGCTCGCAGAAGGTTCCAACGTGGTTTGACCCACAAGCCTATGGCACTCATCAAGAAGCTCCGTAAGGCCAAACGGGAGGCACCACCGGGTGAGAAACCGGAACCAGTGAGGACGCACCTCCGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATTGGTGTTTACAATGGCAAGACCTTCAATCAAGTTGAAATTAAACCTGAAATAATTGGCCACTATCTGGCGGAATTCTCAATCTCTTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCCTCCAGATTTATTCCTCTCAAGTGA 459 0.4858 MADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTHKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEIIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10988 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 FunFam 40S ribosomal protein S15 9 152 - -
Vifa1g10988 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 Gene3D 30s Ribosomal Protein S19; Chain A 9 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Vifa1g10988 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vifa1g10988 152 NCBIfam 30S ribosomal protein S19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10988 Vifa-Chr1 1851652857 1851653315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10988 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.500 6.37e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10988 K02958 - tpra:123918140 292.737