Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g10979 | ATGATTCCATTTACCTTAATATTCTTCACTCTGTTTTCCTCTGTTTTTTCATCTTCCTTGCTCAGTGACTTTCATGCTTTGGTAACACTTAAACAAGGTTTTCAATTCTCAAACCAAGTTCTATACACATGGCAAGGTTCGAATTTCACTTCGGTTTGTTCTTGGGCTGGAATTCAATGCCGCGATAACCGAATCGTGTGGGTCGACTTAACCGATTTGAATCTGTTCGGCTCTGTTTCACCTTCAATCACATCACTTGATAAACTCACACACCTTTCTCTAGCAGGAAACAACTTGACAGGAACCATTGACCTCACAAACTTAACCAATCTTGAGTTTCTAAACATCTCCAACAACATGTTGAGTGGCCAGATGGATCATTGGAACTTGTCCACCATGCAAAACCTACAAGTTCTTGATGTCTATAACAACAATTTCACTTCCTTCCTACCATTAGGCCTTGTTAGTTTGAAACAAAGCCTCAAACACTTGGATCTTGGTGGTAACTTTTTCTTTGGCGAAATCCCGAAAAGCTTTGGAGAATTAGCTTCTCTTGAGTACCTTTCACTAGCTGGAAATGATATCACAGGAAAAATCCCTGGTGAGTTGGGAAATCTAAGTAACTTGATGGAAATTTACTTGGGCTATTTCAATTCCTTTGAAGGTGGAATCCCAATCGAATTCGGAAAGTTAAGAAATCTTGTTCATATGGATCTTTCAAGCTGTGACTTAGATGGTTCAATACCAAAAGAGTTAGGTGAATTGAAAAAACTCAACACACTTTACTTGCATATAAACCAGCTTTCAGGTTCACTACCAAAACATCTTGCTAACTTAACAAACCTTCTCTACCTCGACCTTTCCAGCAATGCACTCACCGGTGAAATTCCATTTGAGTTCATCAATCTCAACAATCTCAAGCTCTTGAATCTTTTCCTCAACAGGTTACATGGTTCTATACCCGATTACATTGCGGATTTCCCTCATTTAGAAACACTTGGTTTATGGATGAACAACTTCACAGGTGAAATTCCATATAAACTCGGTCTCAATGGGAACATTCAAGTCCTTGATTTGTCTTCTAATAAACTCACTGGTGTTATTCCACCTCACCTTTGTTCTTCAAACCAGCTTAAGATTTTGATTCTTCTTAACAATTTTCTGTTTGGTCCTATACCACAAGGTTTAGGAACATGTTATAGTCTCACTAGAGTGAGATTAGGAGAGAATTACCTTAATGGTAGTATTCCAGATGGTTTTCTTTATCTTCCTAAGCTGAATTTAGCTGAGTTGAAGAACAATTACTTGTCAGGAACATTGTTAGAAAATGGTAACGCTTCGTCTTCTCTTTGTTTACAACAGCTTGATTTGTCAAACAATGCTTTGTCTGGTCCTTTACCACATTCCCTCTCCAATTTCACTTCGCTTCAAATCCTTTCGCTTACTGGAAACCAATTCTCGGGTCCCATTCCGAGTTCCATTGGAGGACTTAACCAGGTTTTGAAACTTGACCTTAGCAGAAACTTGTTATCAGGTGAAATTCCGCCTGAAATTGGAAACTGTCTTCATCTTACCTATCTTGACATGAGCCAGAACAATCTCTCTGGCTCCATTCCGCCCTTGTTTTCTAACATTCGTATTTTGAATTACTTGAACTTGTCTAGAAACCATTTGAACCAAACCATACCAAAGTCAATAGGAACAATGAAAAGCCTCACAGTTGCTGATTTCTCCTTCAACGAATTCTCTGGAATCAACTCCACACCAGGAAAAAAAACCAATGCGGATTTCAAGCTCATATTCGCGCTAGGCCTATTGATGTGCTCGTTAGTCTTTGTTATCGCAGCGATTATTAAGGCCAAGTCATTCAAAAAGAATGGTCCTGGTTCTTGGAAGATGACTGCCTTTAAAAAGCTCGAGTTCACTGTTTCGGACATCCTCGAATGCGTGAAAGACGGTAACGTGATTGGAAGAGGAGGTGCAGGGATAGTTTACCATGGAAAAATGCCTAATGGTGTGGAAATAGCAGTAAAAAAGCTACTCGGGTTCGGTGCAAATAGCCATGATCATGGTTTTAGAGCTGAAATTCAAACACTTGGAAACATAAGACACAGAAACATAGTGAGACTACTTGCATTCTGTTCAAACAAAGAAACAAATCTTCTTGTGTATGAATACATGAGAAATGGAAGCTTAGGTGAAGCGTTGCATGGAAAAAAAGGCGCATTCTTGAGTTGGAACTTTCGGTACAAGATATCTATTGATTCTGCTAAAGGACTATGCTACCTTCACCATGATTGTTCTCCATTGATCCTACACAGAGATGTGAAATCTAACAACATTTTGTTGAGTTCCAATTTCGAAGCACATGTTGCTGATTTCGGGCTAGCGAAATTCTTGGTGGATGGCGCTGCATCAGAATGCATGTCTTCAATTGCAGGATCATATGGTTACATTGCACCAGAATATGCATACACATTAAGAGTGGATGAAAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTACTAGAGTTATTAACCGGTAAAAAACCAGTTGGTGATTTCGGAGAAGGTGTAGATCTTGTACAATGGTGCAAAAAAGCAACAAATGGAAGAAGAGAACAAGTTGTCGACATAATCGATTCAAGGCTCATGGTAGTGCCAAAAGAACAAGCCATGCACATGTTCTTCATTGCAATGTTATGCTTAGAAGAAGACAGTGTTCAAAGACCAACCATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCAAGACAATCACAACAAGATCAACAATCTTCTTCTTCATGTTCTTCTAGTATTAATCCACCAAGCAAAAAGTTAATTCAGAATCATAAATTACCTTGTTCTCCTACTTTTAAACATGATCTTTTGGTTTAA | 2901 | 0.3868 | MIPFTLIFFTLFSSVFSSSLLSDFHALVTLKQGFQFSNQVLYTWQGSNFTSVCSWAGIQCRDNRIVWVDLTDLNLFGSVSPSITSLDKLTHLSLAGNNLTGTIDLTNLTNLEFLNISNNMLSGQMDHWNLSTMQNLQVLDVYNNNFTSFLPLGLVSLKQSLKHLDLGGNFFFGEIPKSFGELASLEYLSLAGNDITGKIPGELGNLSNLMEIYLGYFNSFEGGIPIEFGKLRNLVHMDLSSCDLDGSIPKELGELKKLNTLYLHINQLSGSLPKHLANLTNLLYLDLSSNALTGEIPFEFINLNNLKLLNLFLNRLHGSIPDYIADFPHLETLGLWMNNFTGEIPYKLGLNGNIQVLDLSSNKLTGVIPPHLCSSNQLKILILLNNFLFGPIPQGLGTCYSLTRVRLGENYLNGSIPDGFLYLPKLNLAELKNNYLSGTLLENGNASSSLCLQQLDLSNNALSGPLPHSLSNFTSLQILSLTGNQFSGPIPSSIGGLNQVLKLDLSRNLLSGEIPPEIGNCLHLTYLDMSQNNLSGSIPPLFSNIRILNYLNLSRNHLNQTIPKSIGTMKSLTVADFSFNEFSGINSTPGKKTNADFKLIFALGLLMCSLVFVIAAIIKAKSFKKNGPGSWKMTAFKKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGAFLSWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGRREQVVDIIDSRLMVVPKEQAMHMFFIAMLCLEEDSVQRPTMREVVQMLSEFPRQSQQDQQSSSSCSSSINPPSKKLIQNHKLPCSPTFKHDLLV | 966 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g10979 | 966 | Pfam | Leucine Rich repeat | 521 | 536 | IPR001611 | GO:0005515 | |
Vifa1g10979 | 966 | Pfam | Leucine Rich repeat | 279 | 295 | IPR001611 | GO:0005515 | |
Vifa1g10979 | 966 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 219 | 324 | - | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 182 | 206 | IPR003591 | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 133 | 157 | IPR003591 | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 497 | 521 | IPR003591 | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 352 | 375 | IPR003591 | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 545 | 569 | IPR003591 | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 279 | 303 | IPR003591 | - | |
Vifa1g10979 | 966 | SMART | LRR_typ_2 | 231 | 255 | IPR003591 | - | |
Vifa1g10979 | 966 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 218 | 921 | - | - | |
Vifa1g10979 | 966 | Gene3D | Ribonuclease Inhibitor | 22 | 125 | IPR032675 | - | |
Vifa1g10979 | 966 | Pfam | Protein tyrosine and serine/threonine kinase | 653 | 920 | IPR001245 | GO:0004672|GO:0006468 | |
Vifa1g10979 | 966 | Gene3D | Transferase(Phosphotransferase) domain 1 | 727 | 944 | - | - | |
Vifa1g10979 | 966 | MobiDBLite | consensus disorder prediction | 923 | 947 | - | - | |
Vifa1g10979 | 966 | Pfam | Leucine rich repeat | 160 | 216 | IPR001611 | GO:0005515 | |
Vifa1g10979 | 966 | Gene3D | Ribonuclease Inhibitor | 218 | 321 | IPR032675 | - | |
Vifa1g10979 | 966 | Gene3D | Ribonuclease Inhibitor | 126 | 217 | IPR032675 | - | |
Vifa1g10979 | 966 | FunFam | Leucine-rich repeat receptor-like kinase | 22 | 129 | - | - | |
Vifa1g10979 | 966 | ProSiteProfiles | Leucine-rich repeat profile. | 88 | 109 | IPR001611 | GO:0005515 | |
Vifa1g10979 | 966 | Gene3D | Ribonuclease Inhibitor | 322 | 594 | IPR032675 | - | |
Vifa1g10979 | 966 | ProSiteProfiles | Protein kinase domain profile. | 650 | 924 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g10979 | 966 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 619 | 726 | - | - | |
Vifa1g10979 | 966 | Pfam | Leucine rich repeat N-terminal domain | 22 | 60 | IPR013210 | - | |
Vifa1g10979 | 966 | SUPERFAMILY | L domain-like | 296 | 584 | - | - | |
Vifa1g10979 | 966 | Pfam | Leucine Rich Repeat | 353 | 373 | IPR001611 | GO:0005515 | |
Vifa1g10979 | 966 | SUPERFAMILY | RNI-like | 68 | 389 | - | - | |
Vifa1g10979 | 966 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 325 | 599 | - | - | |
Vifa1g10979 | 966 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 130 | 218 | - | - | |
Vifa1g10979 | 966 | SMART | serkin_6 | 650 | 924 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g10979 | 966 | SMART | LRR_sd22_2 | 182 | 208 | - | - | |
Vifa1g10979 | 966 | SMART | LRR_sd22_2 | 86 | 107 | - | - | |
Vifa1g10979 | 966 | SMART | LRR_sd22_2 | 449 | 475 | - | - | |
Vifa1g10979 | 966 | SMART | LRR_sd22_2 | 279 | 305 | - | - | |
Vifa1g10979 | 966 | SMART | LRR_sd22_2 | 108 | 138 | - | - | |
Vifa1g10979 | 966 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 727 | 937 | - | - | |
Vifa1g10979 | 966 | MobiDBLite | consensus disorder prediction | 923 | 953 | - | - | |
Vifa1g10979 | 966 | SUPERFAMILY | Protein kinase-like (PK-like) | 641 | 920 | IPR011009 | - | |
Vifa1g10979 | 966 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 771 | 783 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g10979 | 966 | Gene3D | Phosphorylase Kinase; domain 1 | 615 | 726 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g10979 | Vifa-Chr1 | 1851004731 | 1851008538 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g10979 | 12 | 945 | Receptor kinase-like Gene Family | AT5G65700 | 53.909 | 0.0 | 1021 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vifa1g10979 | PK_Tyr_Ser-Thr | 1.2e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g10979 | - | - | qsu:112009585 | 1375.92 |