Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10979 ATGATTCCATTTACCTTAATATTCTTCACTCTGTTTTCCTCTGTTTTTTCATCTTCCTTGCTCAGTGACTTTCATGCTTTGGTAACACTTAAACAAGGTTTTCAATTCTCAAACCAAGTTCTATACACATGGCAAGGTTCGAATTTCACTTCGGTTTGTTCTTGGGCTGGAATTCAATGCCGCGATAACCGAATCGTGTGGGTCGACTTAACCGATTTGAATCTGTTCGGCTCTGTTTCACCTTCAATCACATCACTTGATAAACTCACACACCTTTCTCTAGCAGGAAACAACTTGACAGGAACCATTGACCTCACAAACTTAACCAATCTTGAGTTTCTAAACATCTCCAACAACATGTTGAGTGGCCAGATGGATCATTGGAACTTGTCCACCATGCAAAACCTACAAGTTCTTGATGTCTATAACAACAATTTCACTTCCTTCCTACCATTAGGCCTTGTTAGTTTGAAACAAAGCCTCAAACACTTGGATCTTGGTGGTAACTTTTTCTTTGGCGAAATCCCGAAAAGCTTTGGAGAATTAGCTTCTCTTGAGTACCTTTCACTAGCTGGAAATGATATCACAGGAAAAATCCCTGGTGAGTTGGGAAATCTAAGTAACTTGATGGAAATTTACTTGGGCTATTTCAATTCCTTTGAAGGTGGAATCCCAATCGAATTCGGAAAGTTAAGAAATCTTGTTCATATGGATCTTTCAAGCTGTGACTTAGATGGTTCAATACCAAAAGAGTTAGGTGAATTGAAAAAACTCAACACACTTTACTTGCATATAAACCAGCTTTCAGGTTCACTACCAAAACATCTTGCTAACTTAACAAACCTTCTCTACCTCGACCTTTCCAGCAATGCACTCACCGGTGAAATTCCATTTGAGTTCATCAATCTCAACAATCTCAAGCTCTTGAATCTTTTCCTCAACAGGTTACATGGTTCTATACCCGATTACATTGCGGATTTCCCTCATTTAGAAACACTTGGTTTATGGATGAACAACTTCACAGGTGAAATTCCATATAAACTCGGTCTCAATGGGAACATTCAAGTCCTTGATTTGTCTTCTAATAAACTCACTGGTGTTATTCCACCTCACCTTTGTTCTTCAAACCAGCTTAAGATTTTGATTCTTCTTAACAATTTTCTGTTTGGTCCTATACCACAAGGTTTAGGAACATGTTATAGTCTCACTAGAGTGAGATTAGGAGAGAATTACCTTAATGGTAGTATTCCAGATGGTTTTCTTTATCTTCCTAAGCTGAATTTAGCTGAGTTGAAGAACAATTACTTGTCAGGAACATTGTTAGAAAATGGTAACGCTTCGTCTTCTCTTTGTTTACAACAGCTTGATTTGTCAAACAATGCTTTGTCTGGTCCTTTACCACATTCCCTCTCCAATTTCACTTCGCTTCAAATCCTTTCGCTTACTGGAAACCAATTCTCGGGTCCCATTCCGAGTTCCATTGGAGGACTTAACCAGGTTTTGAAACTTGACCTTAGCAGAAACTTGTTATCAGGTGAAATTCCGCCTGAAATTGGAAACTGTCTTCATCTTACCTATCTTGACATGAGCCAGAACAATCTCTCTGGCTCCATTCCGCCCTTGTTTTCTAACATTCGTATTTTGAATTACTTGAACTTGTCTAGAAACCATTTGAACCAAACCATACCAAAGTCAATAGGAACAATGAAAAGCCTCACAGTTGCTGATTTCTCCTTCAACGAATTCTCTGGAATCAACTCCACACCAGGAAAAAAAACCAATGCGGATTTCAAGCTCATATTCGCGCTAGGCCTATTGATGTGCTCGTTAGTCTTTGTTATCGCAGCGATTATTAAGGCCAAGTCATTCAAAAAGAATGGTCCTGGTTCTTGGAAGATGACTGCCTTTAAAAAGCTCGAGTTCACTGTTTCGGACATCCTCGAATGCGTGAAAGACGGTAACGTGATTGGAAGAGGAGGTGCAGGGATAGTTTACCATGGAAAAATGCCTAATGGTGTGGAAATAGCAGTAAAAAAGCTACTCGGGTTCGGTGCAAATAGCCATGATCATGGTTTTAGAGCTGAAATTCAAACACTTGGAAACATAAGACACAGAAACATAGTGAGACTACTTGCATTCTGTTCAAACAAAGAAACAAATCTTCTTGTGTATGAATACATGAGAAATGGAAGCTTAGGTGAAGCGTTGCATGGAAAAAAAGGCGCATTCTTGAGTTGGAACTTTCGGTACAAGATATCTATTGATTCTGCTAAAGGACTATGCTACCTTCACCATGATTGTTCTCCATTGATCCTACACAGAGATGTGAAATCTAACAACATTTTGTTGAGTTCCAATTTCGAAGCACATGTTGCTGATTTCGGGCTAGCGAAATTCTTGGTGGATGGCGCTGCATCAGAATGCATGTCTTCAATTGCAGGATCATATGGTTACATTGCACCAGAATATGCATACACATTAAGAGTGGATGAAAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTACTAGAGTTATTAACCGGTAAAAAACCAGTTGGTGATTTCGGAGAAGGTGTAGATCTTGTACAATGGTGCAAAAAAGCAACAAATGGAAGAAGAGAACAAGTTGTCGACATAATCGATTCAAGGCTCATGGTAGTGCCAAAAGAACAAGCCATGCACATGTTCTTCATTGCAATGTTATGCTTAGAAGAAGACAGTGTTCAAAGACCAACCATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCAAGACAATCACAACAAGATCAACAATCTTCTTCTTCATGTTCTTCTAGTATTAATCCACCAAGCAAAAAGTTAATTCAGAATCATAAATTACCTTGTTCTCCTACTTTTAAACATGATCTTTTGGTTTAA 2901 0.3868 MIPFTLIFFTLFSSVFSSSLLSDFHALVTLKQGFQFSNQVLYTWQGSNFTSVCSWAGIQCRDNRIVWVDLTDLNLFGSVSPSITSLDKLTHLSLAGNNLTGTIDLTNLTNLEFLNISNNMLSGQMDHWNLSTMQNLQVLDVYNNNFTSFLPLGLVSLKQSLKHLDLGGNFFFGEIPKSFGELASLEYLSLAGNDITGKIPGELGNLSNLMEIYLGYFNSFEGGIPIEFGKLRNLVHMDLSSCDLDGSIPKELGELKKLNTLYLHINQLSGSLPKHLANLTNLLYLDLSSNALTGEIPFEFINLNNLKLLNLFLNRLHGSIPDYIADFPHLETLGLWMNNFTGEIPYKLGLNGNIQVLDLSSNKLTGVIPPHLCSSNQLKILILLNNFLFGPIPQGLGTCYSLTRVRLGENYLNGSIPDGFLYLPKLNLAELKNNYLSGTLLENGNASSSLCLQQLDLSNNALSGPLPHSLSNFTSLQILSLTGNQFSGPIPSSIGGLNQVLKLDLSRNLLSGEIPPEIGNCLHLTYLDMSQNNLSGSIPPLFSNIRILNYLNLSRNHLNQTIPKSIGTMKSLTVADFSFNEFSGINSTPGKKTNADFKLIFALGLLMCSLVFVIAAIIKAKSFKKNGPGSWKMTAFKKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGAFLSWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGRREQVVDIIDSRLMVVPKEQAMHMFFIAMLCLEEDSVQRPTMREVVQMLSEFPRQSQQDQQSSSSCSSSINPPSKKLIQNHKLPCSPTFKHDLLV 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10979 966 Pfam Leucine Rich repeat 521 536 IPR001611 GO:0005515
Vifa1g10979 966 Pfam Leucine Rich repeat 279 295 IPR001611 GO:0005515
Vifa1g10979 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 219 324 - -
Vifa1g10979 966 SMART LRR_typ_2 182 206 IPR003591 -
Vifa1g10979 966 SMART LRR_typ_2 133 157 IPR003591 -
Vifa1g10979 966 SMART LRR_typ_2 497 521 IPR003591 -
Vifa1g10979 966 SMART LRR_typ_2 352 375 IPR003591 -
Vifa1g10979 966 SMART LRR_typ_2 545 569 IPR003591 -
Vifa1g10979 966 SMART LRR_typ_2 279 303 IPR003591 -
Vifa1g10979 966 SMART LRR_typ_2 231 255 IPR003591 -
Vifa1g10979 966 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 218 921 - -
Vifa1g10979 966 Gene3D Ribonuclease Inhibitor 22 125 IPR032675 -
Vifa1g10979 966 Pfam Protein tyrosine and serine/threonine kinase 653 920 IPR001245 GO:0004672|GO:0006468
Vifa1g10979 966 Gene3D Transferase(Phosphotransferase) domain 1 727 944 - -
Vifa1g10979 966 MobiDBLite consensus disorder prediction 923 947 - -
Vifa1g10979 966 Pfam Leucine rich repeat 160 216 IPR001611 GO:0005515
Vifa1g10979 966 Gene3D Ribonuclease Inhibitor 218 321 IPR032675 -
Vifa1g10979 966 Gene3D Ribonuclease Inhibitor 126 217 IPR032675 -
Vifa1g10979 966 FunFam Leucine-rich repeat receptor-like kinase 22 129 - -
Vifa1g10979 966 ProSiteProfiles Leucine-rich repeat profile. 88 109 IPR001611 GO:0005515
Vifa1g10979 966 Gene3D Ribonuclease Inhibitor 322 594 IPR032675 -
Vifa1g10979 966 ProSiteProfiles Protein kinase domain profile. 650 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10979 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 619 726 - -
Vifa1g10979 966 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Vifa1g10979 966 SUPERFAMILY L domain-like 296 584 - -
Vifa1g10979 966 Pfam Leucine Rich Repeat 353 373 IPR001611 GO:0005515
Vifa1g10979 966 SUPERFAMILY RNI-like 68 389 - -
Vifa1g10979 966 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 325 599 - -
Vifa1g10979 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 130 218 - -
Vifa1g10979 966 SMART serkin_6 650 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10979 966 SMART LRR_sd22_2 182 208 - -
Vifa1g10979 966 SMART LRR_sd22_2 86 107 - -
Vifa1g10979 966 SMART LRR_sd22_2 449 475 - -
Vifa1g10979 966 SMART LRR_sd22_2 279 305 - -
Vifa1g10979 966 SMART LRR_sd22_2 108 138 - -
Vifa1g10979 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 727 937 - -
Vifa1g10979 966 MobiDBLite consensus disorder prediction 923 953 - -
Vifa1g10979 966 SUPERFAMILY Protein kinase-like (PK-like) 641 920 IPR011009 -
Vifa1g10979 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Vifa1g10979 966 Gene3D Phosphorylase Kinase; domain 1 615 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10979 Vifa-Chr1 1851004731 1851008538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10979 12 945 Receptor kinase-like Gene Family AT5G65700 53.909 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g10979 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10979 - - qsu:112009585 1375.92