Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10974 ATGGAGGATGAATCTCCCAGAAGTAAAGTCAAATTCCTTTGCAGTTATGGCGGAAAGGTTCTTCCACGACCCTCCGATGGAGTCCTTAAGTATGTCGGCGGCGAGACTCGCGTCATTTGTATTCCTCGCGACGTAACTTTTGCAGATATGATGAAGAAGGTGAGTGGCGTGGTTGATGGCGAGGTGGTGTTGAAGTACCAGGTGATTCCTGAAGAACTTGATACATTGGTGTCTGTTAGAACACAAGATGATCTCAAGCACATGATCACTGAACTTGATCGCCATGAGAGTGCTGGATCGCCATTGCTTCGCGCGTTTTTATTTCCTTTGAAGCCATTGATACTCGTTGACAACCAGACTCAAATGCAAATGCAACAGCCACTTCCTGTTGAACCATATTTGTTAGAACAGCGTTATCTTGATGCCATCAATGGAATCATACGCCCAAGCCCGAGCTCTAAATTTGCGGCTTGCTCTGCGTGTTCTTCACCAAAATCAACCTCCCCGGATGGATGTACTTCCGGGGAATCGCCCTTCCACTTCCAAGGTATGCAGCAGTTACAGAAGGGTATGGTTTCAATGCAAAGAGTGAGAAGCTCTCCAAGTTTATCCAGTCTTACAAGCACCTACAATAATACACAACCGTTACAGCAGCAGACGCAACAGCATAATCATGGTATCAGTAGAAGTAGGAGTAGTCATTATCAACACCAGCACCACCCTCTTGTTGGACTTAGACCAATACAAGAACTAGGGTCGGGAATGGGGATGGGAAGGGTGTCTCCATCTCAGATGAGTTTGAATATGATGACAGATAATATGACTAGTAGCAGTAGCAGTAATAGAGGTATGAATTACTATTACTCCTTCAATGCAAACAGACCCCATAAAGCTTATGCATATCACGATGATTCAGTTGGTCATCTTGTTGTTGAAAGACTTCAATCAGTCCCCCGAAGTCCCAGAATGTACTTAGCTGAATGA 984 0.4482 MEDESPRSKVKFLCSYGGKVLPRPSDGVLKYVGGETRVICIPRDVTFADMMKKVSGVVDGEVVLKYQVIPEELDTLVSVRTQDDLKHMITELDRHESAGSPLLRAFLFPLKPLILVDNQTQMQMQQPLPVEPYLLEQRYLDAINGIIRPSPSSKFAACSACSSPKSTSPDGCTSGESPFHFQGMQQLQKGMVSMQRVRSSPSLSSLTSTYNNTQPLQQQTQQHNHGISRSRSSHYQHQHHPLVGLRPIQELGSGMGMGRVSPSQMSLNMMTDNMTSSSSSNRGMNYYYSFNANRPHKAYAYHDDSVGHLVVERLQSVPRSPRMYLAE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10974 327 Pfam PB1 domain 29 109 IPR000270 GO:0005515
Vifa1g10974 327 PANTHER OS05G0427100 PROTEIN-RELATED 3 277 - -
Vifa1g10974 327 CDD PB1_UP2 13 108 - -
Vifa1g10974 327 MobiDBLite consensus disorder prediction 190 239 - -
Vifa1g10974 327 SUPERFAMILY CAD & PB1 domains 25 112 - -
Vifa1g10974 327 SMART PB1_new 24 110 IPR000270 GO:0005515
Vifa1g10974 327 Gene3D - 30 108 - -
Vifa1g10974 327 MobiDBLite consensus disorder prediction 190 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10974 Vifa-Chr1 1849726079 1849727148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10974 1 166 MAP Kinase Kinase Kinase AT3G46920 39.053 2.02e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10974 - - tpra:123910761 380.948