Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10973 ATGGCTTCTGCTAGCCTTGGAAGTGGAAATGGAAATGGAAATGGTGGTGTTGGTAGTTCTAGGTCTGCTTTAAGAGGTTCTTCAAGTTCTGTTGATTGGCTTGGGAGAGAGATGCTTGAGATGAGGCTCAGAGACAAAGTTGACCATGACCTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACAGAGAGAGTCAGCCAGATATCATTGATGGCGTCGGTGCTGAAACAGGACATGTAATACGAACCAGCATTGCTGGACGAAATGGTCAATCTAAGCAGAATGTTAGTTATATCGCGGAACACGTAGTCGGGACAGGCTCTTTTGGCACTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGACCATCCAAATATTGTCGCCCTGAGGCATTGTTTCTTTTCAACGACCGACAAAGAAGAGCTTTACTTGAATCTTGTACTAGAATATGTTCCTGAAACCGTGAATCGTATTGCGAGGAACTATAGCAGGATTAACCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGGGCCCTTGCTTACATACACAATTGCATCGGAATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACACACACATCAGTTGAAACTTTGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCATATATTTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACAACGGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTGGTTGAAATTATCAAGGTTTTGGGAACTCCTACAAGGGAAGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCAGAAGCGGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCACCCATTCTTTGATGAATTGAGAGATCCAAGCACCCGCCTTCCCAATGGACGCCCACTGCCTCCGCTGTTTAACTTCAAACCTCAGGAACTTTCTGGTATTCCACCTGATGTCATCAACCGGCTTATTCCAGAACATGCCCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1323 0.4271 MASASLGSGNGNGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVDHDLDDDDDDDDDDDDDDDRESQPDIIDGVGAETGHVIRTSIAGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10973 440 Gene3D Phosphorylase Kinase; domain 1 87 181 - -
Vifa1g10973 440 SMART serkin_6 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10973 440 MobiDBLite consensus disorder prediction 46 78 - -
Vifa1g10973 440 Gene3D Transferase(Phosphotransferase) domain 1 182 430 - -
Vifa1g10973 440 CDD STKc_GSK3 97 389 IPR039192 -
Vifa1g10973 440 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 68 432 - -
Vifa1g10973 440 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g10973 440 FunFam Shaggy-related protein kinase kappa 182 430 - -
Vifa1g10973 440 ProSitePatterns Protein kinases ATP-binding region signature. 108 132 IPR017441 GO:0005524
Vifa1g10973 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vifa1g10973 440 MobiDBLite consensus disorder prediction 50 70 - -
Vifa1g10973 440 FunFam Glycogen synthase kinase-3 beta 86 181 - -
Vifa1g10973 440 SUPERFAMILY Protein kinase-like (PK-like) 101 413 IPR011009 -
Vifa1g10973 440 Pfam Protein kinase domain 104 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10973 440 ProSiteProfiles Protein kinase domain profile. 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10973 Vifa-Chr1 1849387342 1849392992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10973 108 394 Core Cell Cycle Gene Families AT1G76540 35.254 1.72e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa1g10973 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10973 K03083 - gmx:100799387 792.341