Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10972 ATGGCTTCGAGATTTTGGACTCAGGGTGACAGTGATTCGGAAGAAGAGGAACAAAGTGATTATGACGAGGAAATTGAAAATGCAGCAGTTGAATCTGCTGCAACTCAAGGCAATAAAAGCAATTACTACCTTCAGGGTAATGCAACTGACAGTGATGATGAGGATGGTCAGAAGCGTGTTGTTAAATCCGCGAAAGATAAGCGGTTTGATGAGATGGCTTCTACCGTTGATCAGATGAAGAATGCTATTAAAATCAATGATTGGGTTAGCTTGCAAGAGAGCTTTGATAAGATTAATAAACAGCTTGAGAAAGTTATGAGGGTTATTGAGTCGGTGAAGGTTCCTAATCTTTATATCAAGGCTCTTGTAATGCTTGAGGATTTCTTGGCCGAGGCTTTGGCCAATAAGGATGCTAAAAAGAAGATGAGTAGCAGTAATGCAAAAGCGTTCAACTCGATGAAGCAGAAGTTGAAGAAGAATAATAAGCAATATGAAGAGTTGATTAACAAGTGCAGGGAGAATCCTGAGAGTGAGGAGGAAAAGTATGAGAAGGATGAGTCTGATGAAGAATACGAGAGTGATGGTGAGATTATTGAGCCTGATCAGCTCCGAAAGCAGGAACCAAAATCAGATTCTGAAGCTGAGTATGAAGATGAGAAACCTGATGCTGATGGTGAAGGGGCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAGACAGTTCATGAAAAACCCTAGTGAGATCACATGGGACACTGTTAACAAAAAGTTCAAAGAGGTTGTGGCGGCTAGGGGGAAAAAAGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACATTCCTAACAAAAGTGGCTAAGACTCCTGCGCAGAAGCTGGAAATTCTTTTCAGTGTGGTTTCTGCCCAGTTTGATGTTAATCCTGGCCTTAGTGGGCATATGCCAATCAATGTGTGGAAAAAATGTGTTCAGAATATGTTGGTCATTCTAGATATTCTAGTGCAGCACCCAAACATAAAGGTTGATGATTCAGTTGAACTTGATGAGAATGAAACTAAGAAAGGGGCTGATTATGACGGACCCATTCGTGTCTGGGGTAACTTAGTTGCTTTCTTAGAGAAAATAGATGCTGAGTTTTTCAAAAGCCTGCAGTGCATAGATCCTCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCCTTGTTTGTTGTCCTTGCACAGAATGTCCAGGAATATCTTGAAAGGATTGGAGATTTCAAAGCTTCCTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAATCACAAGAAGTTTATGAGGCAATGAGGAAATTGGCTGAGATGACAGAAGATGCAGATGAGGAGAGTGAGGAATCAAAAGGTTTTGAGGATACAAGAATTCCCACTGCATTTGTTGTTACCCCTGAGGTTGTAGCGCGGAAACCCACATTCCCGGAGAAGAGCAGAACCTTAATGGATGTATTAGTATCACTAATATACAAACATGGAGATGAGCGCACGAAAGCTCGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCACAGTAGCCCGTGATCTGTTGCTAATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGCCTATGTGCTTTTCGGGCAGGGCTGGTTTCTGAAGCTCATGGCTGTCTAGCTGAACTCTATTCTGGTGGAAGGGTGAAAGAATTGCTTGCACAAGGAGTTTCACAGAGTCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGAAGGCAGATGCCATATCATATGCATATCAATCTCGAGCTATTGGAATCAGTGCATCTCACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCAAAGCGAAGGATCATCAGTAAGAATTTCCGTCGCTTGCTTGAGGTCAGCGAGAAACAAACATTCACAGGTCCTCCCGAAAATGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAAAGGAGACTTCCTCAAGGCCTTTGAGATTATTGCATCTCTTGACGTTTGGAAATTTGTGAAAAACCGAGACACCGTGCTAGAAATGCTCAAGGACAAAATCAAGGAGGAGGCACTTAGGACATACCTATTTACCTTTGCTTCATCATATGATTCTTTGAGTGTGAATCAGCTCACAAATTTTTTCGAACTCTCTCTTCCCCGTGTTCATAGTATTGTCAGTAGGATGATGGTCAACGAGGAGCTTCATGCAAGCTGGGATCAGCCATCTGGGTGCATTATTTTCCGAAATGTGGAACACTCAAGACTGCAGGCTTTGGCATTCCAGTTGACTGAGAAACTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACGGAAGCAAGACTAGGCGGTGGTGGGTTGGATCTGCCTCCAAGGCGAAGGGATGGCCAGGATTATGCCGCCGCAGCTGCTGGTGGTGGAACATCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGTGGTGGACGCGCAGGATATGGTGGAAGGGCATTGCCGTTCAATCAAGCAGGTGGGAGTGGCGGCTATTCAAGAGGACGCGGAACCGCTGGAGGTGGCTATCAAAGTTCAGGGAGGAATCAAGGGGGTTCAGCGCTGAGGGGACCCCACGGAGATGCATCTACCCGCATGGTTAGCCTTAGGGGAGTTCGAGCTTAA 2790 0.4419 MASRFWTQGDSDSEEEEQSDYDEEIENAAVESAATQGNKSNYYLQGNATDSDDEDGQKRVVKSAKDKRFDEMASTVDQMKNAIKINDWVSLQESFDKINKQLEKVMRVIESVKVPNLYIKALVMLEDFLAEALANKDAKKKMSSSNAKAFNSMKQKLKKNNKQYEELINKCRENPESEEEKYEKDESDEEYESDGEIIEPDQLRKQEPKSDSEAEYEDEKPDADGEGAWDQKLSKKDRLLERQFMKNPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGADYDGPIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPLFVVLAQNVQEYLERIGDFKASSKVALKRVELIYYKSQEVYEAMRKLAEMTEDADEESEESKGFEDTRIPTAFVVTPEVVARKPTFPEKSRTLMDVLVSLIYKHGDERTKARAMLCDIYHHALLDEFTVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRAGLVSEAHGCLAELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRRIISKNFRRLLEVSEKQTFTGPPENVRDHVMAATRVLIKGDFLKAFEIIASLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFASSYDSLSVNQLTNFFELSLPRVHSIVSRMMVNEELHASWDQPSGCIIFRNVEHSRLQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGTSSGGRWQDLSYSQTRQGGGRAGYGGRALPFNQAGGSGGYSRGRGTAGGGYQSSGRNQGGSALRGPHGDASTRMVSLRGVRA 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10972 929 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 924 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa1g10972 929 MobiDBLite consensus disorder prediction 136 156 - -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 168 232 - -
Vifa1g10972 929 Pfam PCI domain 661 789 IPR000717 -
Vifa1g10972 929 SUPERFAMILY "Winged helix" DNA-binding domain 717 792 IPR036390 -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 1 61 - -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 197 216 - -
Vifa1g10972 929 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Vifa1g10972 929 Coils Coil 147 174 - -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 820 855 - -
Vifa1g10972 929 FunFam Eukaryotic translation initiation factor 3 subunit C 720 795 - -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 12 27 - -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 31 50 - -
Vifa1g10972 929 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 180 196 - -
Vifa1g10972 929 MobiDBLite consensus disorder prediction 882 929 - -
Vifa1g10972 929 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 866 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa1g10972 929 Coils Coil 443 470 - -
Vifa1g10972 929 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10972 Vifa-Chr1 1849377573 1849381083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10972 1 929 Eukaryotic Initiation Factors Gene Family AT3G56150 67.656 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10972 K03252 - gmx:100781967 1441.02