Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10960 ATGGAGCGTACAATCGCAATCTCAATGCGTGCGGTTGTGGCGGTATTTTTAGAAATGAAAGTGAGAGTCCTGTTTCCCAAAACTCTCGTTCCTCCCTTTCATCACTATCTCAAACCAGACCTGCACATTTTTCCTTTCAAATCCATGGCTCTGATCCTGCACGCCGCCTCTGCAAACAAAAATGTTTTCAAGACTCTGATTGCTGCAGAGTATGTTGGTGTCAATGTTCAATTGGCTCCAGATTTTCAGATGGGTGTCTCTAATAAAACCCCCCAGTTTCTCAAGTTGAACCCTATTGGAAAGGTTCCGGTCTTGGAAACCCCTGACGGTGCCGTCTTTGAGAGCAATGCAATTGCCCGTTATGTTGCCCGATTGGGTGATAACAATTTGTTTGGATCTTCTCCCATTGATCTGGCTCATGTTGACCAGTGGATTGATTTTGCTTCTTTGGAGATTGATTCCAATCTTTCCAAGTTGTGCATTCCAAGACTTGGAAAGGCCCCCTACATTCCTCTTGTGGAGGAGTCTGCATTTTCTTCATTGAAGAGAGCATTTGAGGCTCTTAACACTCACCTTGCCCACAATACCTACCTGGTTGGGGATTCTGTTACCCTTGCTGATATTATAACTACATCTCACTTGTGGCTTGGTTTCTCCAAACTCTTGGTCAAGAGCTACACCTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCTTGGTCAACCAGCCAAACTTCCGAAAGATAATAGGCCAGGTTAAGCAGACTGAAGCTTTGCCACCTATTCCATCTGCTCAGAAGCCTAAGGAATCTAAGCCCAAAACTAAAGATGAACCCAAGAAAGTGGCTAAATCAGAGCCCGCAAAGCCCAAAGTAGAAGAAACTGAAGAGGAGGCACCCAAGCCCAAAGCCAAGAATCCTCTTGATCTTCTTCCCCCAAGCAAGATGATATTGGACGAGTGGAAAAGACTTTACTCTAACACTAAGACCAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGACTACAAATATCAAGATGAGAATACTGTTTCTTTCGTGACACTGAACAAGGTTGGTGGATTTCTACAGAGGATGGATCTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGCGGCTCCATTTAAGGTGAAGGGATTGTGGCTTTTCCGTGGACAGGAGATTCCACAGTTTGTCATTGATGAATGCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTCCGACGAAGCTCAGAAAGAGCGTGTTAGTCAGATGATTGAAGATTTTGAACCATTTGAGGGAGAGGCTCTTTTGGATGCCAAGTGCTTTAAGTGA 1395 0.4466 MERTIAISMRAVVAVFLEMKVRVLFPKTLVPPFHHYLKPDLHIFPFKSMALILHAASANKNVFKTLIAAEYVGVNVQLAPDFQMGVSNKTPQFLKLNPIGKVPVLETPDGAVFESNAIARYVARLGDNNLFGSSPIDLAHVDQWIDFASLEIDSNLSKLCIPRLGKAPYIPLVEESAFSSLKRAFEALNTHLAHNTYLVGDSVTLADIITTSHLWLGFSKLLVKSYTSEFPHVERYFWTLVNQPNFRKIIGQVKQTEALPPIPSAQKPKESKPKTKDEPKKVAKSEPAKPKVEETEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYQDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSAAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDEAQKERVSQMIEDFEPFEGEALLDAKCFK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10960 464 FunFam Elongation factor 1B gamma 49 122 - -
Vifa1g10960 464 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 134 262 IPR010987 -
Vifa1g10960 464 FunFam Elongation factor 1 gamma 127 262 - -
Vifa1g10960 464 SUPERFAMILY eEF1-gamma domain 305 464 IPR036433 GO:0003746|GO:0006414
Vifa1g10960 464 CDD GST_C_EF1Bgamma_like 139 257 - -
Vifa1g10960 464 SUPERFAMILY Thioredoxin-like 42 127 IPR036249 -
Vifa1g10960 464 FunFam Elongation factor 1-gamma 1 304 464 - -
Vifa1g10960 464 CDD GST_N_EF1Bgamma 53 125 - -
Vifa1g10960 464 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 304 464 IPR001662 GO:0003746|GO:0006414
Vifa1g10960 464 Gene3D - 127 259 - -
Vifa1g10960 464 Gene3D Glutaredoxin 48 122 - -
Vifa1g10960 464 Pfam Glutathione S-transferase, C-terminal domain 175 244 IPR004046 -
Vifa1g10960 464 SUPERFAMILY GST C-terminal domain-like 121 259 IPR036282 -
Vifa1g10960 464 SMART EF1G_2 303 411 IPR001662 GO:0003746|GO:0006414
Vifa1g10960 464 Pfam Elongation factor 1 gamma, conserved domain 303 411 IPR001662 GO:0003746|GO:0006414
Vifa1g10960 464 SFLD Main (cytGST) 53 237 - -
Vifa1g10960 464 SFLD Glutathione Transferase (cytosolic) 53 237 IPR040079 -
Vifa1g10960 464 Pfam Glutathione S-transferase, N-terminal domain 51 124 IPR004045 -
Vifa1g10960 464 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 49 464 IPR044628 GO:0004364
Vifa1g10960 464 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 49 130 IPR004045 -
Vifa1g10960 464 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 304 464 IPR036433 GO:0003746|GO:0006414
Vifa1g10960 464 MobiDBLite consensus disorder prediction 259 310 - -
Vifa1g10960 464 MobiDBLite consensus disorder prediction 269 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10960 Vifa-Chr1 1848850881 1848854239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10960 49 464 Eukaryotic Initiation Factors Gene Family AT1G57720 71.942 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10960 K03233 - gmx:100795680 710.294