Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10955 ATGGGTTGCATATGCTCCAAGGGAAAATCGAGTGATGAAAATGGGAGAGAATTGAAGACTAAGAATAAGAAATCATCAAAGCGTTTGGTTGTGAGTAATAGGGAAAATGATGCAACTACACACCTCATATCAAATACGTATCATCGCGATTCCCCTGATATTACGAGGGAAGGAACAGGATCAGAACAAGACATTAAGAAGATAATCACATGTTTGAGTGTCAAGACCAATGGCCAAAGGACGTCCATTGTTGTCCCAGGCTGGCCTTCTTGGCTCACTTCCGTTGCCGCTGAAGCCATCGTCGGTTGGCTTCCTCGTACAGCCGACTCTTTTCACAAATTAGATAAGATTGGCCAAGGAACTTATAGCAGTGTTTACCGAGCTCGTGATCTCCAGACTAACAAAATTGTTGCTTTGAAGAAGGTCAAATTTACTAATATGGATCCTGAAAGTGTTCGTTTTATGGCCAGAGAAATTATTCTTTTGCGAAAGCTTGATCATCCCAATGTCATGAAACTTGAAGGGATTATTACTTCAAGCCTTTCTGCTAGCTTGTACCTTATTTTCGAATATATGGAACATGATCTTACTGGCCTCGCAACATTGCCTCGCAACAAGTTTACCCAACCACAGATCAAGTGTTATATGCAACAACTTCTTCGCGGTCTTGAGCATTGTCACAGTCGCGGTGTTATGCATCGTGATATCAAGGGCTCCAATCTTCTTCTTGACAATGATGGCAATCTGAAGATTGCTGATTTTGGACTTGCAACTCTGTTTCAGCCATCTCAAGAGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGCCCACCTGAACTTTTGCTTGGATCTACAAACTATCACGTTTCTGTGGATTTGTGGAGTGCCGGTTGTATTCTTGCAGAAATGTTAGCCGGAAAACCTATAATGCCTGGACGAACTGAGGTGGAGCAACTGCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGACAAAGCTACCACATGCGACAATTTTTAAACCTCAACAACCTTACAAACGTATTCTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGTCTCTTGGAGGTCCTACTTGCTATTGAACCAAAAGATCGAGGAACTGCATCTTCAGCACTTGAGAATGAGTTCTTCACATCAAACCCACTTCCTTGTGATCCATCGACTTTGCCAAAGTACTCGCCAAGTAAGGAGTTTGATGCCAAACTCCGTGAAGAGGAAGCTAGAAGACGACGGGCAGCAAATAAAGGACATGGCCAGGAATTAGCTGGAAGGAGTTTTAAAGAGTCTAAGGTTGTACCAGCACCTGACGCTAATGGTGAGCTTCAGGCATCAATAGAGAAGAGACGAGAGTGGTGTAATTCAAAATGCATCAGTGAGAAGTACAATCCTGAAGAGGAAGGAGGTGCATATGGATCGTCATGCAATATGAATTTGAAAGAGGAAACTGTTCTTGCAGCCCCTGATCGGGTCTTTACATCAAAAAACTCTAAGCTGAGAAAACAAAATTCCTGCTGGCAAGGTAGCACTGCACAGTTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACAGCTTGATATGAGTAGAGACTGTAATTTGAATTCACAGTGGCAAGAAGATCACTTTGATTTGAGATATAGTCATTTAACTGATGGTGAGTTCAATCAAATGCTGGATGAAACCAAAGATTTACGCAAGAAAGACTTCCATCTATTAGGAAAGGATCGTGCCATGGGTAATGCTCCCAAAAATGGGCACATCAACTATTCTGGGCCCCTACTGCATCCAGAGGCTAATTTTGAAGAGATCCTGAAGGAGCATGAAAGACAAATCCAACAAGCTGTGCGCAAAGCTCGTTTGGTTAAGGACAAGAATAAAAAGGCTGCCAGTGAGATTGGGCAATCTGAGACACTAGTTCACCAAATGAGATATGGCAAGTCACATATCAAAGAGTTTTGA 2019 0.4225 MGCICSKGKSSDENGRELKTKNKKSSKRLVVSNRENDATTHLISNTYHRDSPDITREGTGSEQDIKKIITCLSVKTNGQRTSIVVPGWPSWLTSVAAEAIVGWLPRTADSFHKLDKIGQGTYSSVYRARDLQTNKIVALKKVKFTNMDPESVRFMAREIILLRKLDHPNVMKLEGIITSSLSASLYLIFEYMEHDLTGLATLPRNKFTQPQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNDGNLKIADFGLATLFQPSQEQPLTSRVVTLWYRPPELLLGSTNYHVSVDLWSAGCILAEMLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKTKLPHATIFKPQQPYKRILSETFKDFPSSALSLLEVLLAIEPKDRGTASSALENEFFTSNPLPCDPSTLPKYSPSKEFDAKLREEEARRRRAANKGHGQELAGRSFKESKVVPAPDANGELQASIEKRREWCNSKCISEKYNPEEEGGAYGSSCNMNLKEETVLAAPDRVFTSKNSKLRKQNSCWQGSTAQLSRFSNSVAVRGDSQLDMSRDCNLNSQWQEDHFDLRYSHLTDGEFNQMLDETKDLRKKDFHLLGKDRAMGNAPKNGHINYSGPLLHPEANFEEILKEHERQIQQAVRKARLVKDKNKKAASEIGQSETLVHQMRYGKSHIKEF 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10955 672 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10955 672 Coils Coil 413 433 - -
Vifa1g10955 672 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10955 672 FunFam probable serine/threonine-protein kinase At1g54610 194 435 - -
Vifa1g10955 672 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Vifa1g10955 672 SUPERFAMILY Protein kinase-like (PK-like) 104 403 IPR011009 -
Vifa1g10955 672 Coils Coil 617 644 - -
Vifa1g10955 672 FunFam probable serine/threonine-protein kinase At1g54610 98 193 - -
Vifa1g10955 672 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10955 672 Gene3D Transferase(Phosphotransferase) domain 1 194 435 - -
Vifa1g10955 672 MobiDBLite consensus disorder prediction 414 442 - -
Vifa1g10955 672 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g10955 672 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Vifa1g10955 672 MobiDBLite consensus disorder prediction 406 458 - -
Vifa1g10955 672 PANTHER CELL DIVISION PROTEIN KINASE 109 401 - -
Vifa1g10955 672 CDD STKc_CDK9_like 111 395 - -
Vifa1g10955 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10955 Vifa-Chr1 1848372103 1848376229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10955 103 451 Core Cell Cycle Gene Families AT5G10270 48.626 1.85e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa1g10955 Pkinase 9.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10955 - - cam:101495256 973.385