Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g10954 | ATGCAAGAAGGGAAAGAGAAATTGGAAAGAGAGATGGAAAGTCGAAAGGAGAAGCGAAAGGCATTGAAGAAAATGAAGAGAAAGGAGAGAAGGAAGGAGATTGCGGAGATGGAACGGTTGGAGGAAGAAGCGCGTCTCAACGATCCCGAGGAGCAGAGGAAGAGGATGGTTTTGGAGCAGCAAGAGGCCGACAGAGTCGAAAGGGATAGGATCGCATTCGAAGAGAGGGAAAAGGATTGGATCATCAAACAACAACAACTTCAACTTGTTCACCAGGAACAATCTCAACAACTCGATAACACTGATAATAACGACGTCGTAGAAGAAGAAGAAGCTGCAGATGATGATGATGGTCCTCCGGAGATTATTTGGCTAGGTAATGAAATAATCATCAAAAAGAAAAAGCCCGTTCTCCTCCTCCACCACCACCGGGACCACCGTGATGATAATATACCTACATCAAATCCCTTTCCACCCGAATCTCCCTCTCAAACTCGCTCGCTTCCCGAGAATGTTGCTCAACAAATACCTAATTTCGGAACCGAACTGGATAAAGCTCACTGTCCTTTTCATCTTAAAACCGGAGTCTGCCGATTTGGTGATCGTTGTAGCAGGGTTCATTTCTACCCTGATAAGTCCTGCACCTTTGTCATCAAAAATATGTATAATGGTCCTGGCCTTGCTTGGGAACAAGATCAAGGACTTGAGTATACAGATGAGGAGATTCAATGTTGTTTTGAAGAGTTTTATGAGGATGTTCATACCGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAGAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTACAGTACAAGTTGTTGGATTCAGCTCTGCTTGCTTATAACTCAATTAATGGTCGCTATTTCGCTGGGAAACAGGTCAGATGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCTATTTGTGGCGAGTATAAGAAATCTCGTTACCAGACTTGTTCTCGTGGAACAGCCTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGAGACTATGAATGGGCAGATTCTGACAGACCACCCCCAAAATTTTGGGTTAACGAGATGGTTGCTTTATTTGGTCATTCTGATGATTATGAGATCTCGAGGATTCATGACAAATCTAGTACACCGAAGCACTCCAGCAATGTCTCAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCTAAATCTACAGAGATAGATCAGTCTAATGGTGGTCGTTCTGATAGAAGAAAATATGAAGATGAAAGAAAACAAAGAACTCATCCCGAGGAGTGGAATACCGACTTTAAATGCAACCACAAAAGGAAGCGCAGGAACAGAACTCCTGATATTGATTCTGACATGGAATGGTTAGAAGAGAGAGATAGGGAAAAGTATCATGAACGCAGAAGGAAAAGCTCATTTAATATGATTAAGGATGACAGTAGCAGAAGACGTGAAGAGTATTCTGAGGTGGATAGAGCAACTGTAAACAAGGACCATGAAAAGCAGCATGATAGAAAAGGAAGGAACTCACGAATGTCGGATTGGGATAGTAGGGACTGTACTTATGAGGCTGGATCTGATGAGGATAGTAATAGAAGAAGGCACTGTAGTAGCCAAAGGAAAAGATCAAGACATCATAGCAGGGACAGCAATAATGTAACTGAAGAACCTGACAAAAATAGAGGCCATGAAGAGTATTTTGATGTGGATTGGGATACTATGACTATGGACAATGAAAAGCAGAATGGTGGCAAAGGAGTGATCTCGCCAAAGCGAAATAAGGGTAGTAAGCGGCATCAGATTTACGAGGCTGGATCAAATGAGGATAGACATAGAAAAAGGCACCACAGAAGCCAAATGAAGGAATCTAGACACATGAGCATGGATGGCAACTGTGTAATTGATGAATCTGACAAAGATAGAGGAGAGATGGAATCACAAGATGATTACTCAAGGAAAAGCTCAAGGCTCAAAAGATCTGGTGGTCTTCAGGACTAG | 2031 | 0.421 | MQEGKEKLEREMESRKEKRKALKKMKRKERRKEIAEMERLEEEARLNDPEEQRKRMVLEQQEADRVERDRIAFEEREKDWIIKQQQLQLVHQEQSQQLDNTDNNDVVEEEEAADDDDGPPEIIWLGNEIIIKKKKPVLLLHHHRDHRDDNIPTSNPFPPESPSQTRSLPENVAQQIPNFGTELDKAHCPFHLKTGVCRFGDRCSRVHFYPDKSCTFVIKNMYNGPGLAWEQDQGLEYTDEEIQCCFEEFYEDVHTEFLKFGEIVNFKVCRNGSFHLRGNVYVQYKLLDSALLAYNSINGRYFAGKQVRCKFVNLTRWKVAICGEYKKSRYQTCSRGTACNFIHCFRNPGGDYEWADSDRPPPKFWVNEMVALFGHSDDYEISRIHDKSSTPKHSSNVSETDSDRYHSRRSKSTEIDQSNGGRSDRRKYEDERKQRTHPEEWNTDFKCNHKRKRRNRTPDIDSDMEWLEERDREKYHERRRKSSFNMIKDDSSRRREEYSEVDRATVNKDHEKQHDRKGRNSRMSDWDSRDCTYEAGSDEDSNRRRHCSSQRKRSRHHSRDSNNVTEEPDKNRGHEEYFDVDWDTMTMDNEKQNGGKGVISPKRNKGSKRHQIYEAGSNEDRHRKRHHRSQMKESRHMSMDGNCVIDESDKDRGEMESQDDYSRKSSRLKRSGGLQD | 676 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 489 | 676 | - | - | |
Vifa1g10954 | 676 | PRINTS | U2 auxiliary factor small subunit signature | 207 | 227 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | PRINTS | U2 auxiliary factor small subunit signature | 271 | 293 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | PRINTS | U2 auxiliary factor small subunit signature | 336 | 348 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | PRINTS | U2 auxiliary factor small subunit signature | 298 | 322 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | PRINTS | U2 auxiliary factor small subunit signature | 243 | 258 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | PRINTS | U2 auxiliary factor small subunit signature | 188 | 207 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 103 | 118 | - | - | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 92 | 120 | - | - | |
Vifa1g10954 | 676 | ProSiteProfiles | Zinc finger C3H1-type profile. | 182 | 210 | IPR000571 | GO:0046872 | |
Vifa1g10954 | 676 | Coils | Coil | 5 | 47 | - | - | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 146 | 167 | - | - | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 633 | 670 | - | - | |
Vifa1g10954 | 676 | SUPERFAMILY | RNA-binding domain, RBD | 246 | 314 | IPR035979 | GO:0003676 | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 489 | 546 | - | - | |
Vifa1g10954 | 676 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 214 | 314 | IPR000504 | GO:0003723 | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 607 | 621 | - | - | |
Vifa1g10954 | 676 | SMART | c3hfinal6 | 316 | 345 | IPR000571 | GO:0046872 | |
Vifa1g10954 | 676 | SMART | c3hfinal6 | 183 | 209 | IPR000571 | GO:0046872 | |
Vifa1g10954 | 676 | FunFam | Zinc finger CCCH domain-containing protein 5 | 215 | 312 | - | - | |
Vifa1g10954 | 676 | SMART | rrm2_1 | 239 | 310 | IPR003954 | GO:0003676 | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Vifa1g10954 | 676 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 317 | 344 | IPR000571 | GO:0046872 | |
Vifa1g10954 | 676 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 188 | 207 | IPR000571 | GO:0046872 | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 559 | 586 | - | - | |
Vifa1g10954 | 676 | PANTHER | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 168 | 494 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 385 | 443 | - | - | |
Vifa1g10954 | 676 | Gene3D | - | 213 | 312 | IPR012677 | - | |
Vifa1g10954 | 676 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Vifa1g10954 | 676 | ProSiteProfiles | Zinc finger C3H1-type profile. | 316 | 346 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g10954 | Vifa-Chr1 | 1848122123 | 1848128162 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vifa1g10954 | zf-CCCH | 4.6e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g10954 | K24273 | - | cam:101495256 | 830.476 |