Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10954 ATGCAAGAAGGGAAAGAGAAATTGGAAAGAGAGATGGAAAGTCGAAAGGAGAAGCGAAAGGCATTGAAGAAAATGAAGAGAAAGGAGAGAAGGAAGGAGATTGCGGAGATGGAACGGTTGGAGGAAGAAGCGCGTCTCAACGATCCCGAGGAGCAGAGGAAGAGGATGGTTTTGGAGCAGCAAGAGGCCGACAGAGTCGAAAGGGATAGGATCGCATTCGAAGAGAGGGAAAAGGATTGGATCATCAAACAACAACAACTTCAACTTGTTCACCAGGAACAATCTCAACAACTCGATAACACTGATAATAACGACGTCGTAGAAGAAGAAGAAGCTGCAGATGATGATGATGGTCCTCCGGAGATTATTTGGCTAGGTAATGAAATAATCATCAAAAAGAAAAAGCCCGTTCTCCTCCTCCACCACCACCGGGACCACCGTGATGATAATATACCTACATCAAATCCCTTTCCACCCGAATCTCCCTCTCAAACTCGCTCGCTTCCCGAGAATGTTGCTCAACAAATACCTAATTTCGGAACCGAACTGGATAAAGCTCACTGTCCTTTTCATCTTAAAACCGGAGTCTGCCGATTTGGTGATCGTTGTAGCAGGGTTCATTTCTACCCTGATAAGTCCTGCACCTTTGTCATCAAAAATATGTATAATGGTCCTGGCCTTGCTTGGGAACAAGATCAAGGACTTGAGTATACAGATGAGGAGATTCAATGTTGTTTTGAAGAGTTTTATGAGGATGTTCATACCGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAGAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTACAGTACAAGTTGTTGGATTCAGCTCTGCTTGCTTATAACTCAATTAATGGTCGCTATTTCGCTGGGAAACAGGTCAGATGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCTATTTGTGGCGAGTATAAGAAATCTCGTTACCAGACTTGTTCTCGTGGAACAGCCTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGAGACTATGAATGGGCAGATTCTGACAGACCACCCCCAAAATTTTGGGTTAACGAGATGGTTGCTTTATTTGGTCATTCTGATGATTATGAGATCTCGAGGATTCATGACAAATCTAGTACACCGAAGCACTCCAGCAATGTCTCAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCTAAATCTACAGAGATAGATCAGTCTAATGGTGGTCGTTCTGATAGAAGAAAATATGAAGATGAAAGAAAACAAAGAACTCATCCCGAGGAGTGGAATACCGACTTTAAATGCAACCACAAAAGGAAGCGCAGGAACAGAACTCCTGATATTGATTCTGACATGGAATGGTTAGAAGAGAGAGATAGGGAAAAGTATCATGAACGCAGAAGGAAAAGCTCATTTAATATGATTAAGGATGACAGTAGCAGAAGACGTGAAGAGTATTCTGAGGTGGATAGAGCAACTGTAAACAAGGACCATGAAAAGCAGCATGATAGAAAAGGAAGGAACTCACGAATGTCGGATTGGGATAGTAGGGACTGTACTTATGAGGCTGGATCTGATGAGGATAGTAATAGAAGAAGGCACTGTAGTAGCCAAAGGAAAAGATCAAGACATCATAGCAGGGACAGCAATAATGTAACTGAAGAACCTGACAAAAATAGAGGCCATGAAGAGTATTTTGATGTGGATTGGGATACTATGACTATGGACAATGAAAAGCAGAATGGTGGCAAAGGAGTGATCTCGCCAAAGCGAAATAAGGGTAGTAAGCGGCATCAGATTTACGAGGCTGGATCAAATGAGGATAGACATAGAAAAAGGCACCACAGAAGCCAAATGAAGGAATCTAGACACATGAGCATGGATGGCAACTGTGTAATTGATGAATCTGACAAAGATAGAGGAGAGATGGAATCACAAGATGATTACTCAAGGAAAAGCTCAAGGCTCAAAAGATCTGGTGGTCTTCAGGACTAG 2031 0.421 MQEGKEKLEREMESRKEKRKALKKMKRKERRKEIAEMERLEEEARLNDPEEQRKRMVLEQQEADRVERDRIAFEEREKDWIIKQQQLQLVHQEQSQQLDNTDNNDVVEEEEAADDDDGPPEIIWLGNEIIIKKKKPVLLLHHHRDHRDDNIPTSNPFPPESPSQTRSLPENVAQQIPNFGTELDKAHCPFHLKTGVCRFGDRCSRVHFYPDKSCTFVIKNMYNGPGLAWEQDQGLEYTDEEIQCCFEEFYEDVHTEFLKFGEIVNFKVCRNGSFHLRGNVYVQYKLLDSALLAYNSINGRYFAGKQVRCKFVNLTRWKVAICGEYKKSRYQTCSRGTACNFIHCFRNPGGDYEWADSDRPPPKFWVNEMVALFGHSDDYEISRIHDKSSTPKHSSNVSETDSDRYHSRRSKSTEIDQSNGGRSDRRKYEDERKQRTHPEEWNTDFKCNHKRKRRNRTPDIDSDMEWLEERDREKYHERRRKSSFNMIKDDSSRRREEYSEVDRATVNKDHEKQHDRKGRNSRMSDWDSRDCTYEAGSDEDSNRRRHCSSQRKRSRHHSRDSNNVTEEPDKNRGHEEYFDVDWDTMTMDNEKQNGGKGVISPKRNKGSKRHQIYEAGSNEDRHRKRHHRSQMKESRHMSMDGNCVIDESDKDRGEMESQDDYSRKSSRLKRSGGLQD 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10954 676 MobiDBLite consensus disorder prediction 489 676 - -
Vifa1g10954 676 PRINTS U2 auxiliary factor small subunit signature 207 227 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 PRINTS U2 auxiliary factor small subunit signature 271 293 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 PRINTS U2 auxiliary factor small subunit signature 336 348 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 PRINTS U2 auxiliary factor small subunit signature 298 322 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 PRINTS U2 auxiliary factor small subunit signature 243 258 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 PRINTS U2 auxiliary factor small subunit signature 188 207 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 MobiDBLite consensus disorder prediction 103 118 - -
Vifa1g10954 676 MobiDBLite consensus disorder prediction 92 120 - -
Vifa1g10954 676 ProSiteProfiles Zinc finger C3H1-type profile. 182 210 IPR000571 GO:0046872
Vifa1g10954 676 Coils Coil 5 47 - -
Vifa1g10954 676 MobiDBLite consensus disorder prediction 146 167 - -
Vifa1g10954 676 MobiDBLite consensus disorder prediction 633 670 - -
Vifa1g10954 676 SUPERFAMILY RNA-binding domain, RBD 246 314 IPR035979 GO:0003676
Vifa1g10954 676 MobiDBLite consensus disorder prediction 489 546 - -
Vifa1g10954 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 314 IPR000504 GO:0003723
Vifa1g10954 676 MobiDBLite consensus disorder prediction 607 621 - -
Vifa1g10954 676 SMART c3hfinal6 316 345 IPR000571 GO:0046872
Vifa1g10954 676 SMART c3hfinal6 183 209 IPR000571 GO:0046872
Vifa1g10954 676 FunFam Zinc finger CCCH domain-containing protein 5 215 312 - -
Vifa1g10954 676 SMART rrm2_1 239 310 IPR003954 GO:0003676
Vifa1g10954 676 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g10954 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 344 IPR000571 GO:0046872
Vifa1g10954 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 207 IPR000571 GO:0046872
Vifa1g10954 676 MobiDBLite consensus disorder prediction 559 586 - -
Vifa1g10954 676 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 168 494 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10954 676 MobiDBLite consensus disorder prediction 385 443 - -
Vifa1g10954 676 Gene3D - 213 312 IPR012677 -
Vifa1g10954 676 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g10954 676 ProSiteProfiles Zinc finger C3H1-type profile. 316 346 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10954 Vifa-Chr1 1848122123 1848128162 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g10954 zf-CCCH 4.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10954 K24273 - cam:101495256 830.476