Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10953 ATGCAAGAAGGGAAAGAGAAATTGGAAAGAGAGATGGAAAGTCGAAAGGAGAAGCGAAAGGCATTGAAGAAAATGAAGAGAAAGGAGAGAAGGAAGGAGATTGCGGAGATGGAACGGTTGGAGGAAGAAGCGCGTCTCAACGATCCCGAGGAGCAGAGGAAGAGGATGGTTTTGGAGCAGCAAGAGGCCGACAGAGTCGAAAGGGATAGGATCGCATTCGAAGAGAGGGAAAAGGATTGGATCATCAAACAACAACAACTTCAACTTGTTCACCAGGAACAATCTCAACAACTCGATAACACTGATAATAACGACGTCGTAGAAGAAGAAGAAGCTGCAGATGATGATGATGGTCCTCCGGAGATTATTTGGCTAGGTAATGAAATAATCATCAAAAAGAAAAAGCCCGTTCTCCTCCTCCACCACCACCGGGACCACCGTGATGATAATATACCTACATCAAATCCCTTTCCACCCGAATCTCCCTCTCAAACTCGCTCGCTTCCCGAGAATGTTGCTCAACAAATACCTAATTTCGGAACCGAACTGGATAAAGCTCACTGTCCTTTTCATCTTAAAACCGGAGTCTGCCGATTTGGTGATCGTTGTAGCAGGGTTCATTTCTACCCTGATAAGTCCTGCACCTTTGTCATCAAAAATATGTATAATGGTCCTGGCCTTGCTTGGGAACAAGATCAAGGACTTGAGGTTTGTTCATTCCTCAGTATCCTACCGGGAGGCTCCTTCAACTTGCTGGAGGCTCCTGATTTTCGCTTTGCTTACTTCAACTTAAACATATTAGCTCTTTTATCAGGCAATATCCCATTCATGGCTTGA 837 0.448 MQEGKEKLEREMESRKEKRKALKKMKRKERRKEIAEMERLEEEARLNDPEEQRKRMVLEQQEADRVERDRIAFEEREKDWIIKQQQLQLVHQEQSQQLDNTDNNDVVEEEEAADDDDGPPEIIWLGNEIIIKKKKPVLLLHHHRDHRDDNIPTSNPFPPESPSQTRSLPENVAQQIPNFGTELDKAHCPFHLKTGVCRFGDRCSRVHFYPDKSCTFVIKNMYNGPGLAWEQDQGLEVCSFLSILPGGSFNLLEAPDFRFAYFNLNILALLSGNIPFMA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10953 278 MobiDBLite consensus disorder prediction 103 118 - -
Vifa1g10953 278 MobiDBLite consensus disorder prediction 92 120 - -
Vifa1g10953 278 ProSiteProfiles Zinc finger C3H1-type profile. 182 210 IPR000571 GO:0046872
Vifa1g10953 278 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 207 IPR000571 GO:0046872
Vifa1g10953 278 Coils Coil 5 47 - -
Vifa1g10953 278 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g10953 278 MobiDBLite consensus disorder prediction 146 167 - -
Vifa1g10953 278 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g10953 278 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 163 237 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10953 278 PRINTS U2 auxiliary factor small subunit signature 188 207 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa1g10953 278 PRINTS U2 auxiliary factor small subunit signature 207 227 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10953 Vifa-Chr1 1848122123 1848123660 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g10953 zf-CCCH 3.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10953 K24273 - cam:101495256 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10953 1 1848122123 1848123660 Vifa1g10953 1 1848122123 1848123660 ECH