Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10952 ATGGATCAGTGGGAGGAGGAAGCAGAGGAAAGAATTGAGATTGGCGAACATGGCGATCATGACGATCATGGCGAGGGTGACGATGAACAGAAAGAACCGCTGCTGGTTAGACGGAGAACCAATGTATCTTCTCAACTCGCCATCGTTGGAGCCAATAAATCTCCAATTCAAAGTCTTGATTACGAGATGATTGAGAATGATCTATTGAAGCAGGACTGGAGGTCAAGAACAAAGGTTGAGATATACCAATATGTTGCTCTCAAGTGGACCCTTGCACTTCTTATTGGCTTAATTACAGGACTTGTTGGCTTCTTTAACAACCTTGGAGTTGAAAATATTGCTGGTTTCAAACTTCTAGTTACCAATAATCTCATGCTCAAGCAAAAGTATCATCAGGCATTTGCAGTTTACTTTGGCTGTAACATGATTTTAGGGGTTGGCGCCGCAGCTCTATGTGCTTACATTGCCCCTGCAGCAGCAGGTTCCGGCATACCAGAGGTCAAGGCATACCTCAATGGCATTGATGCACATTCTATATTGGCTCCATCTACACTCTTTGTCAAGATATTTGGTTCAATTTTAGGAGTTGCTGGTGGTTTTATTGTGGGGAAAGAAGGACCTATGGTACATACAGGTGCTTGCATTGCTAATTTACTTGGACAAGGCGGTTCTCGTAAATATAGACTCACTTGGAGATGGCTCAGATACTTCAAAAATGATAGAGATCGAAGGGATTTGATCACGTGCGGTGCAGCTGCAGGTGTTGCAGCTGCTTTCCGTGCTCCCGTTGGTGGAGTCCTTTTCGCACTTGAAGAAGCAGCTTCGTGGTGGAGGAGTGCTCTTCTGTGGCGCACGTTTTTCACCACCGCCGTTGTAGCAGTTGTTCTTAGGGGTCTTATACAATTTTGCCATCAAGGAGAAGGCAAATGTGGTCTATTTGGGAAAGGAGGAATCATCATGTTTGATGTCAATTCTCTAGAGCCTGCCTACACAACACCAGACCTCCTCGCAGTTATATTTCTTGGAGTCATTGGTGGTCTTATGGGAAGCCTTTACAATTATCTTGTCGACAAAGTCCTTCGCACCTACACCACCATAAATGGGAAAGGTCCTATATTCAAAATTCTACTAGTGATGGTTATCTCGTTTATGACCTCTTGTATTCGATTTGGGCTACCCTTGCTATCAAAGTGTGTGCCATGTCCAGGGGAGTGCCCCAAGTCCCCATCCGCGGGCTTTTCAATGCACTATGACAGTTTTCAATGTCCATCAAACCACTTCAATGATCTCAGCTCCCTCCTTTTCACTACCAACGACGAGGCCATCCGCAAACTATTCATTGATAGCTCTGACTCTGCCAACGCTGCATTTCAACTATCAAGTCTCATAATTTTCTTCGTGGCCATATACTTGCTTGGAATTGTCACATACGGTGTTGCCATTCCCTCTGGTCTCTTCATTCCTGTCATTCTTGCAGGAGCTTCATACGGCCGACTAGTAGGGACTGTGTTAAATCCACTCACGGATCTTGATGCCGGCTACTTTGCTCTCCTTGGAGCTGCATCCTTCCTTGGTGGCACCATGAGAATGACAGTCTCTCTCTGTGTCATACTTCTCGAACTCACTAACAACTTGTTGATGCTCCCATTAGTTATGTTGGTTCTCCTCGTTTCTAAAACAGTGGCAGATTGTTTCAACAAAGGTGTTTATGATCAGATTGTGATGTTGAAAGGACTTCCCTTCATGGAGGCACACGCAGAGCCATACATGAAGAATTTAGTCGCAGGCGATGTTGTATCATGTCCACTCTTTACTTTCTGCGGAATAGAGAAAGTTGGTAACATTGTCCATGCATTAAAAGTGACAGGACATCACGGATTTCCTGTAATCGACGAGCCGCCTTTCACCGATGCTGCCGAGTTATGCGGTTTGGTGTTGAGGTCTCATCTGCTAGTACTTCTCAAGCACAAGACATTGTTCACTAGGAGGAGGGTTATGACAAGGTCTACCATTATTAATAAGTTGAAGGCAAGTGATTTCGCGAAACCGGGTTTAGGGAGAGGGATAACTCTGGAAGATTTAGAAATTTCACAAGAGGATATGGAAATGTTTGTTGATCTTCATCCAATAATTAACAAATCTCCATATACTGTTGTTGAAACAATGTCACTTGCAAAAGCTGCTCTTCTTTTTAGGGAACTTGGACTCAGACACTTGCTAGTTGTGCCAAAGATACCAGGAAGGCCTCCAATTGTTGGGATCCTAACAAGACATGATTTCATGCCAGAGTATATCTTGGGGCTATTCCCTAGCTTGAATCCTCACAAGTAG 2331 0.4427 MDQWEEEAEERIEIGEHGDHDDHGEGDDEQKEPLLVRRRTNVSSQLAIVGANKSPIQSLDYEMIENDLLKQDWRSRTKVEIYQYVALKWTLALLIGLITGLVGFFNNLGVENIAGFKLLVTNNLMLKQKYHQAFAVYFGCNMILGVGAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVAGGFIVGKEGPMVHTGACIANLLGQGGSRKYRLTWRWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGLIQFCHQGEGKCGLFGKGGIIMFDVNSLEPAYTTPDLLAVIFLGVIGGLMGSLYNYLVDKVLRTYTTINGKGPIFKILLVMVISFMTSCIRFGLPLLSKCVPCPGECPKSPSAGFSMHYDSFQCPSNHFNDLSSLLFTTNDEAIRKLFIDSSDSANAAFQLSSLIIFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLVGTVLNPLTDLDAGYFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLVSKTVADCFNKGVYDQIVMLKGLPFMEAHAEPYMKNLVAGDVVSCPLFTFCGIEKVGNIVHALKVTGHHGFPVIDEPPFTDAAELCGLVLRSHLLVLLKHKTLFTRRRVMTRSTIINKLKASDFAKPGLGRGITLEDLEISQEDMEMFVDLHPIINKSPYTVVETMSLAKAALLFRELGLRHLLVVPKIPGRPPIVGILTRHDFMPEYILGLFPSLNPHK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10952 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 595 763 - -
Vifa1g10952 776 SUPERFAMILY Clc chloride channel 66 584 IPR014743 -
Vifa1g10952 776 MobiDBLite consensus disorder prediction 10 34 - -
Vifa1g10952 776 PRINTS Plant CLC chloride channel signature 62 70 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g10952 776 PRINTS Plant CLC chloride channel signature 273 281 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g10952 776 PRINTS Plant CLC chloride channel signature 287 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g10952 776 PRINTS Plant CLC chloride channel signature 430 446 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g10952 776 SMART cbs_1 714 765 IPR000644 -
Vifa1g10952 776 SMART cbs_1 602 655 IPR000644 -
Vifa1g10952 776 Gene3D Clc chloride channel 80 582 - -
Vifa1g10952 776 SUPERFAMILY CBS-domain pair 586 762 IPR046342 -
Vifa1g10952 776 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g10952 776 FunFam Chloride channel ClC3 80 398 - -
Vifa1g10952 776 CDD ClC_6_like 57 582 - -
Vifa1g10952 776 Pfam CBS domain 710 760 IPR000644 -
Vifa1g10952 776 Gene3D - 583 762 IPR046342 -
Vifa1g10952 776 Pfam Voltage gated chloride channel 145 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 ProSiteProfiles CBS domain profile. 711 771 IPR000644 -
Vifa1g10952 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 24 766 - -
Vifa1g10952 776 PRINTS Chloride channel signature 252 271 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 PRINTS Chloride channel signature 157 174 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 PRINTS Chloride channel signature 188 207 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g10952 776 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10952 Vifa-Chr1 1848110517 1848114641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10952 1 776 Ion Channels AT5G49890 72.357 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10952 K05016 - cave:132178584 1081.63