Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10949 ATGTCTGAAGAGGCTGGATCCATGTTGGTAGTTTACGACGATCCCTCTGACCAACACTCCCTGTCTTTGGGAGATACAAGCAGCACGGAAGAGTCACCTGCTGAAACCACCCTCTCCTTGGAACCAACTAATGATCACATTCCATACATTGGTCAGAGGTTTCCCACTCATGATTCTGCTTATGTATTCTATAGCCATTTCGCCAAGACCTGTGGCTTCTCAATTAGGCGTCACCGAACTGAGGGAAAAGACGGTGTTGGGAAAGGACTTACTAGACGATACTTTGTTTGTCATCGTGCTGGCAATACTCCTGCTAAATCATCAAATGAAACTAAGCCTCAGAGAAATAGAAAATCTTCTCGATGTGCTTGTCAGGCTTATTTGAGGATAAGCAAAACCACCGAATTTGGACCTCCTGAGTGGCGGGTCACTGGTTTTGCCAATCATCATAATCACGACCTTTTGGAACCTAACCAAGTTCGATTCCTTCCTGCCTACAGAACTATATCAGACGCTGACAAGAATCGAATTCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATCAGGCTAATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCCTTTAGAAAATTAGATCCCGAAGAAGAGACCCTAGATTTGTTAAGAATGTGCAAGAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATGCAAACAACCGGTTACAAAACATTGCCTGGTCGTATGCCTCTTCCATCCAATTGTATGATATCTTTGGGGATGCTGTGGTATTTGATACAACCCATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGAATCAATAACTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTGCTGCGAGATGAAACTCTCAGGTCATTTTCCTGGGCAACAAAGGCTTTCTTAGGTTTTATGAGTGGGAAGGCTCCACAGACTATATTAACTGACCAAAACATGTGTCTCAAAGAAGCACTATCTGCAGAAATGCCGATAACAAAACACGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTCTGTTCTTTTGGGCTGCATTCCAATCGGCACATGCTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTTTAAGCGCACAGACACGACTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGACCAAACTGGAGAACAACAAACCATGCAGCAGAATCTACAAAATGTTTGCCTCAAAACAGGAGCTCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTCGTGTTGGCTGCACATTATGCATCTTTTTCAGTGGAAGACGGGTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCTCTCAAGAAGGAGTTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTTTGAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCGGATACATATCTTCCCATCCGATGGCGTCGTATCAGCGTGCCGCCTTCGAAGCTTCTTCAAAATGCATCCAGTGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATGTTGCTACAGAACAAGTTTCCATTCTTCTGTCTCGCATTAGGGAGCAACCCATTTCATTACAATGTGCCAGAGATATTTCTACTATTAATAGGAATCTATGA 2040 0.4245 MSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESPAETTLSLEPTNDHIPYIGQRFPTHDSAYVFYSHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSNETKPQRNRKSSRCACQAYLRISKTTEFGPPEWRVTGFANHHNHDLLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMIRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCKNIKEKDPNFKFEYTLDANNRLQNIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETLRSFSWATKAFLGFMSGKAPQTILTDQNMCLKEALSAEMPITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMLNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSSQEGVISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDTYLPIRWRRISVPPSKLLQNASSDHAERVKLFQNMVSSLITESAKSKERLDVATEQVSILLSRIREQPISLQCARDISTINRNL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10949 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Vifa1g10949 679 Pfam FAR1 DNA-binding domain 63 155 IPR004330 -
Vifa1g10949 679 Pfam MULE transposase domain 278 370 IPR018289 -
Vifa1g10949 679 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g10949 679 Pfam SWIM zinc finger 550 587 IPR007527 GO:0008270
Vifa1g10949 679 MobiDBLite consensus disorder prediction 19 43 - -
Vifa1g10949 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 656 IPR031052 GO:0006355
Vifa1g10949 679 SMART 26again6 564 591 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10949 Vifa-Chr1 1846667532 1846670116 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g10949 MULE 1.7e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10949 - - gmx:100810717 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10949 1 1846667532 1846670116 Vifa1g10949 1 1846667532 1846670116 ECH