Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10948 ATGTCTGAAGAGGCTGGATCCATGTTGGTAGTTTACGACGATCCCTCTGACCAACACTCCCTGTCTTTGGGAGATACAAGCAGCACGGAAGAGTCACCTGCTGAAACCACCCTCTCCTTGGAACCAACTAATGATCACATTCCATACATTGGTCAGAGGTTTCCCACTCATGATTCTGCTTATGTATTCTATAGCCATTTCGCCAAGACCTGTGGCTTCTCAATTAGGCGTCACCGAACTGAGGGAAAAGACGGTGTTGGGAAAGGACTTACTAGACGATACTTTGTTTGTCATCGTGCTGGCAATACTCCTGCTAAATCATCAAATGAAACTAAGCCTCAGAGAAATAGAAAATCTTCTCGATGTGCTTGTCAGGCTTATTTGAGGATAAGCAAAACCACCGAATTTGGACCTCCTGAGTGGCGGGTCACTGGTTTTGCCAATCATCATAATCACGACCTTTTGGAACCTAACCAAGTTCGATTCCTTCCTGCCTACAGAACTATATCAGACGCTGACAAGAATCGAATTCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATCAGGCTAATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCCTTTAGAAAATTAGATCCCGAAGAAGAGACCCTAGATTTGTTAAGAATGTGCAAGAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATGCAAACAACCGGTTACAAAACATTGCCTGGTCGTATGCCTCTTCCATCCAATTGTATGATATCTTTGGGGATGCTGTGGTATTTGATACAACCCATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGAATCAATAACTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTGCTGCGAGATGAAACTCTCAGGTCATTTTCCTGGGCAACAAAGGCTTTCTTAGGTTTTATGAGTGGGAAGGCTCCACAGACTATATTAACTGACCAAAACATGTGTCTCAAAGAAGCACTATCTGCAGAAATGCCGATAACAAAACACGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTCTGTTCTTTTGGGCTGCATTCCAATCGGCACATGCTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTTTAAGCGCACAGACACGACTTGCTCACTTTGTTGAACAGTTTGCTTTGCACAACCAGGTAGCTGTTGCTGTGGATTTTAAAGACCAAACTGGAGAACAACAAACCATGCAGCAGAATCTACAAAATGTTTGCCTCAAAACAGGAGCTCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTCGTGTTGGCTGCACATTATGCATCTTTTTCAGTGGAAGACGGGTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCTCTCAAGAAGGAGTTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTTTGAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCGGATACATATCTTCCCATCCGATGGCGTCGTATCAGCGTGCCGCCTTCGAAGCTTCTTCAAAATGCATCCAGTGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATGTTGCTACAGAACAAGTTTCCATTCTTCTGTCTCGCATTAGGGAGCAACCCATTTCATTACAATGTGCCAGAGATATTTCTACTATTAATAGGAATCTATGA 2058 0.4247 MSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESPAETTLSLEPTNDHIPYIGQRFPTHDSAYVFYSHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSNETKPQRNRKSSRCACQAYLRISKTTEFGPPEWRVTGFANHHNHDLLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMIRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCKNIKEKDPNFKFEYTLDANNRLQNIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETLRSFSWATKAFLGFMSGKAPQTILTDQNMCLKEALSAEMPITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMLNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQFALHNQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSSQEGVISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDTYLPIRWRRISVPPSKLLQNASSDHAERVKLFQNMVSSLITESAKSKERLDVATEQVSILLSRIREQPISLQCARDISTINRNL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10948 685 Pfam SWIM zinc finger 556 593 IPR007527 GO:0008270
Vifa1g10948 685 Pfam FAR1 DNA-binding domain 63 155 IPR004330 -
Vifa1g10948 685 Pfam MULE transposase domain 278 370 IPR018289 -
Vifa1g10948 685 ProSiteProfiles Zinc finger SWIM-type profile. 559 595 IPR007527 GO:0008270
Vifa1g10948 685 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g10948 685 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 662 IPR031052 GO:0006355
Vifa1g10948 685 MobiDBLite consensus disorder prediction 19 43 - -
Vifa1g10948 685 SMART 26again6 570 597 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10948 Vifa-Chr1 1846667532 1846670116 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g10948 MULE 1.7e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10948 - - gmx:100810717 1269.22