Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10947 ATGAGTGGAAGAAATAATGGGTTTGATTGGGTGAAGGGTAAAATTGTTGGAAGTGGATCTTTTGGCAGTGTTCATCTAGCCATGGATAAATCAACCGGTGGACTTTTCGTAGCGAAAACAGCGCATTCCAATGCAGAACATGATGCTCTCCAGAACGAGGTGAATATTCTAAATACATTAAAGAATTCATCACCATCATCATCATCGTTGCCATCGCCCTATGTTATTCAATGTTTAGGGACAGAGTATGATCACCAAGATGATAAGCTGCATGTTTTCATGGAGTATATGGCTGGAGGTAGTTTGGCTGACGCGTTACACAAGTTTGGTGGTTCATTCGATGAGCATGTTGTTCGTTTGTATACTAGACAGATTTTGCTTGGGTTATATCATCTTCACCAAAATGAAATTGTGCATTGTGACCTCAAATGCAAAAATGTGCTTTTGGCCTCGTCTGGGACAGTTAAGATCGCAGATTTCGGATGTGCAAAAAGGATCAGCAAGGACTCGCACATGAACAACGGGGGAACTCCTCTATGGATGGCTCCTGAAGTTATATTATCGAGGAATGCTAAAGATGAGAGGGTTGTTGATTTTGCAGCAGCAGATATATGGTCTTTGGGATGTACTGTTATTGAAATGGCCACCGGTAGGCCTCCTTGGGTTCATGATGACCTTGTTTCAATTTCAAATCCAATGTCTGCTATGTTTAAGATTGCCTGTGGTGATGGGTTACCTCAATTTCCAAGTCATTTCTCTCATGAAGGTTCCGATTTCTTGAGAAAATGTTTGGTGAGAGATCCCAATAAGAGATCTACTGCTAAGGAATTACTTAACCATCCATTCCTTGTTGCAAATACTTTAACTTATCACAAACACTACTCTAATTCCTCACCAGCAGCTGTCTTGGATGTTCATCAATTCGAGGATGATTATGATGATGACGATGATGAATTGCCAAGTCCAGCAGGGGGGATTAAATTCTCCTTCGGAAATGACTTTGTGTGCCAACAAGGAAAAACAATATGGCAACAGGAAGACAGTGCATCAGGGAATCATTGGATCACTATTAGATCAAGGTGA 1083 0.4109 MSGRNNGFDWVKGKIVGSGSFGSVHLAMDKSTGGLFVAKTAHSNAEHDALQNEVNILNTLKNSSPSSSSLPSPYVIQCLGTEYDHQDDKLHVFMEYMAGGSLADALHKFGGSFDEHVVRLYTRQILLGLYHLHQNEIVHCDLKCKNVLLASSGTVKIADFGCAKRISKDSHMNNGGTPLWMAPEVILSRNAKDERVVDFAAADIWSLGCTVIEMATGRPPWVHDDLVSISNPMSAMFKIACGDGLPQFPSHFSHEGSDFLRKCLVRDPNKRSTAKELLNHPFLVANTLTYHKHYSNSSPAAVLDVHQFEDDYDDDDDELPSPAGGIKFSFGNDFVCQQGKTIWQQEDSASGNHWITIRSR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10947 360 SMART serkin_6 10 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10947 360 CDD STKc_MAPKKK 9 283 - -
Vifa1g10947 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vifa1g10947 360 SUPERFAMILY Protein kinase-like (PK-like) 9 293 IPR011009 -
Vifa1g10947 360 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vifa1g10947 360 Pfam Protein kinase domain 11 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10947 360 Gene3D Transferase(Phosphotransferase) domain 1 8 317 - -
Vifa1g10947 360 ProSiteProfiles Protein kinase domain profile. 10 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10947 360 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 10 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10947 Vifa-Chr1 1846665733 1846666815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10947 8 286 MAP Kinase Kinase Kinase AT2G32510 39.716 1.06e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa1g10947 Pkinase 6.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10947 K20716 - psat:127086258 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10947 1 1846665733 1846666815 Vifa1g10947 1 1846665733 1846666815 ECH