Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10944 ATGGCTTCAAATCAAATGTCAGCTACAACCCGTGCAGCGGCGACTAATGATGCTTTATACAAGGAATTGTGGCATGCATGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGAGAGAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCGTCTATGAATCAGGGATTAGAGCAGCAAATGCCCTCCTTTAATCTTCCTTCTAAAATACTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTACCTGAATCCGATCAAAGTGAGGTGACAAGCCCAGATGATCCTCTGCCTGAACCTCCAAGACATGCAGATGATTGTTTACCACCACTGGACATGACTCAGCAGCCACCGTGGCAAGAATTGGTGGCAACTGATTTGCATGGGAGTGAATGGCATTTTCGACATATTTTTCGTGGGCAACCTAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAGAAATTAGTAGCTGGAGACGCATTTATATTCTTAAGGGGTGAAAATGGAGAACTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTTCCACTGGAACATTGTTTTCTGTTTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTATTAACAAATATCTCGAAGCTCGGAATCATAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCTGAACGAAGGTTTAGCGGTACAATTGTGGGTGTAGAAGATAATAAATCGTCCGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAGTGGGATGAACCATCATCAATTTTGCGTCCGGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCCCTCCCGCAAACTCCCAGCCAGCCCAACGAAACAAGAGATCACGGCCTCCTGTTCTACCTACCACATTGCCTGATTCTTCTTTGCAAGGTATATGGAAATCACCAGTTGAATCTCCACCATTCCCTTATCGTGACTCTCAACACACTCGAGACCTCTATCCATCCCCAAGATTCAGCTCTACTGCAACTAGCTTTCTTGGTTTTGGTGGGAACAGTCCCGCTTCTAACAAGTCAATATATTGGTCTAGTAGATTGGAAAACTCTACAGAACCTTTTTCACCTATAGCACTTAAAGAATCCGGAGAGAAGAGACAAGGCACTGGAAGTGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAGCAGCTTCTTTGTTAAGAAGGGTTGGTGATGATGAGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCGCAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACTCGTTTTGATGGATATGAAGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATTGAGGGCGAGCTTTGTGGACCAACAAGAAAATGGCTAGTTGTTTACACCGACAATGAAGATGATAGGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACACCCGAAGAGGTGAAGAAGCTTTCACCCAAAATAGGTCTTCTGACCAATGAAGAAGGTAAACCAAGCAAACTGGATTCTGATGCAGTTGTCAATCTGGAGGACCAGTCATCTATTGTGGGACCTGGTTGCTAA 1911 0.4443 MASNQMSATTRAAATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPESDQSEVTSPDDPLPEPPRHADDCLPPLDMTQQPPWQELVATDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPAQRNKRSRPPVLPTTLPDSSLQGIWKSPVESPPFPYRDSQHTRDLYPSPRFSSTATSFLGFGGNSPASNKSIYWSSRLENSTEPFSPIALKESGEKRQGTGSGCRLFGIQLLENSNAEESLQAASLLRRVGDDESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGPTRKWLVVYTDNEDDRMMVGDDPWLEFCSVVRKIFIYTPEEVKKLSPKIGLLTNEEGKPSKLDSDAVVNLEDQSSIVGPGC 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10944 636 SMART B3_2 113 200 IPR003340 GO:0003677
Vifa1g10944 636 MobiDBLite consensus disorder prediction 327 363 - -
Vifa1g10944 636 Gene3D - 507 601 - -
Vifa1g10944 636 ProSiteProfiles B3 DNA-binding domain profile. 137 200 IPR003340 GO:0003677
Vifa1g10944 636 Gene3D - 261 333 - -
Vifa1g10944 636 MobiDBLite consensus disorder prediction 98 119 - -
Vifa1g10944 636 MobiDBLite consensus disorder prediction 481 501 - -
Vifa1g10944 636 Pfam Auxin response factor 224 306 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g10944 636 Pfam B3 DNA binding domain 119 198 IPR003340 GO:0003677
Vifa1g10944 636 CDD B3_DNA 116 198 IPR003340 GO:0003677
Vifa1g10944 636 FunFam Auxin response factor 97 200 - -
Vifa1g10944 636 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 601 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g10944 636 MobiDBLite consensus disorder prediction 468 501 - -
Vifa1g10944 636 ProSiteProfiles PB1 domain profile. 512 605 IPR000270 GO:0005515
Vifa1g10944 636 MobiDBLite consensus disorder prediction 331 363 - -
Vifa1g10944 636 Pfam AUX/IAA family 509 602 IPR033389 -
Vifa1g10944 636 SUPERFAMILY CAD & PB1 domains 514 589 - -
Vifa1g10944 636 FunFam Auxin response factor 507 601 - -
Vifa1g10944 636 FunFam Auxin response factor 261 333 - -
Vifa1g10944 636 Gene3D - 102 200 IPR015300 -
Vifa1g10944 636 SUPERFAMILY DNA-binding pseudobarrel domain 116 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10944 Vifa-Chr1 1846072481 1846078136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10944 1 630 B3 DNA Binding Superfamily AT1G59750 66.617 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g10944 AUX_IAA 5.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10944 K14486 - gmx:100793224 1133.63