Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10938 ATGGATGTTCTAGATATTGTCCACATTAGCAAAGGAGACCAAGAGAATGTATCTGCAATGCTTGTTGCAGTGTTATGGTTGAGAAACATATCATTTATTGTGATCAATAATGAAAATCATATTCAAGCCGTTGAAGATGAGGGGCTATTCAACACTGCCAAGTTGATTGGATGTGAAATTAAAGATCTGAAGTTGACTTTGTCAACTCGCAAAATGAAAGTTGGTAATGGTATTATTGTCCAGAAGTTGACGCTATCTCAGGCCAGTGATGCAAGAGATACTTTAGCGAAATCTATTTATGCATATCTGTTTGATTGGCTGATCAAACAAATAAACAAATCACTAGTTGTTGGCAAAAGAAGAACATGTAAATCTATCAGTATTCTAGATATATATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAATTCTACATAAATTATGTAAATAAAAGATTACAGCAATTCAATCGGCATTTGTTCAAGCTAGAACAAGAGGAATACATGAATATATCCAAGATGTAA 528 0.3371 MDVLDIVHISKGDQENVSAMLVAVLWLRNISFIVINNENHIQAVEDEGLFNTAKLIGCEIKDLKLTLSTRKMKVGNGIIVQKLTLSQASDARDTLAKSIYAYLFDWLIKQINKSLVVGKRRTCKSISILDIYGFESFNRNSFEQFYINYVNKRLQQFNRHLFKLEQEEYMNISKM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10938 175 Gene3D - 135 170 - -
Vifa1g10938 175 PANTHER MYOSIN 3 170 - -
Vifa1g10938 175 Gene3D Myosin VI head, motor domain, U50 subdomain 10 119 - -
Vifa1g10938 175 Gene3D Kinesin motor domain 120 134 IPR036961 -
Vifa1g10938 175 ProSiteProfiles Myosin motor domain profile. 1 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g10938 175 SMART MYSc_2a 1 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g10938 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 170 IPR027417 -
Vifa1g10938 175 Pfam Myosin head (motor domain) 3 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10938 Vifa-Chr1 1844439441 1844439968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10938 2 170 Myosins gene family AT1G50360 74.118 6.21e-81 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10938 - - gmx:100782618 280.026