Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10933 ATGATCGCCGCAATTTCATGGATTCCTAAAGGAGTCTTCAAAGCGGAACCTGTTTTCGCCGAACCCCCTTCCAAAGAGGAAATCGATGAACTCATCTCAAACACTGTGGATGAAGAGAAGGATATGGAAGAAGACGATGAAGTTGCACATGCTTTAACAGTAGCTGATGCGATTGGTAAACCATCCAAGGAAAATACTGGCGATATTACCCTCGCCTTGCAAGAGCTCAACATGGAAACCTATGATGATGAAGATGATAAAGGTTTTGAGTTGTTCAGTTCAGGGACGGGTGATCTTTATTATCAGAGTAATGAATTAGATCCATATATCAAAGATAAGAATGAAGAGTATGATTCTGAAGATGTTGAAGACATGATTATTAATCCAACTGATTCTGTTGTTGTTTGTGCGCGTACGGAAGACGATGTCAATTACCTTGAAGTTTGGATACTTGAGGATGCCAATACCCGTGATATGAACTTGTATATTCACCATGATATTATTATTCCGGAATTTCCACTTTGCACGGCTTGGCTTGATTGTCCCCTTAAAGGAGGAGAAAAAGGAAACTTCTTGGCCGTTGGTTCAATGGGACCATCGATAGAAATTTGGGATCTTGATGTTATTGATGAGGTAGAACCATGTGTGGTGTTAGGTGGCAAAGAGCAAAGCAAAAAGGGGAAACATGGGAAAAAGAAATCAATAAAATACAGAGAGGACAGTCACACTGGCTCAGTACTTGGTCTTGCTTGGAACAAGGAGTTCAGCAATCTACTTGCAAGTGCTAGTGCTGACAAGAGCGTAAAAATTTGGGATGTCGTCGCTGGAAAGTGTACTCTTACAATGGAGCATCACACTGACAAGGTTCAAGCAGTTGCTTGGAATCATCATAGACAACATGTTCTTCTTAGTGGCGCATTTGATCATACAGTTGTTTTGAAGGATGTAAGGAATCCGTCACACTCAGGCTGTACGTGGTCAGTCGGTGCTGATGTAGAGAGCTTGGCATGGGATCCACACGCTGAGAACCTTTTTGCGGTGAGTCTTGAAGATGGTACCATCAAGTGTTTTGATGTCCGGAATGCCATGTCCAATGTCACATCTGAGCAGAGTGCTACTTTTACACTTCATGCACACGACAAATCTGTTACCTCCCTAGCCTATAATATGTCAGCTCCGAATCTTCTTGCTACTGGATCCACGGATAAAACGGTAAAACTATGGGATTTGTCTAACAACCAACCATCTTGTGTCGCAACGAAAGAACCAAAAGCTGGGTCTGTCTTTTCTATCTCTTTCGCAGAGGACAACCCATTCTTGTTGGCAATAGGAGGCTCAAAGGGAAAATTAGAATTATGGGACACCTTAGTCAACGAAGGTGTCTCTCGAAGATATGAGAAATACAGCAGGAACCAACCTCAATCCGGGGCCTGA 1434 0.4268 MIAAISWIPKGVFKAEPVFAEPPSKEEIDELISNTVDEEKDMEEDDEVAHALTVADAIGKPSKENTGDITLALQELNMETYDDEDDKGFELFSSGTGDLYYQSNELDPYIKDKNEEYDSEDVEDMIINPTDSVVVCARTEDDVNYLEVWILEDANTRDMNLYIHHDIIIPEFPLCTAWLDCPLKGGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVVLGGKEQSKKGKHGKKKSIKYREDSHTGSVLGLAWNKEFSNLLASASADKSVKIWDVVAGKCTLTMEHHTDKVQAVAWNHHRQHVLLSGAFDHTVVLKDVRNPSHSGCTWSVGADVESLAWDPHAENLFAVSLEDGTIKCFDVRNAMSNVTSEQSATFTLHAHDKSVTSLAYNMSAPNLLATGSTDKTVKLWDLSNNQPSCVATKEPKAGSVFSISFAEDNPFLLAIGGSKGKLELWDTLVNEGVSRRYEKYSRNQPQSGA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10933 477 ProSitePatterns Trp-Asp (WD) repeats signature. 396 410 IPR019775 -
Vifa1g10933 477 SUPERFAMILY WD40 repeat-like 115 454 IPR036322 GO:0005515
Vifa1g10933 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 273 - -
Vifa1g10933 477 FunFam Putative WD repeat-containing protein C17D11.16 322 464 - -
Vifa1g10933 477 Gene3D - 60 325 IPR015943 GO:0005515
Vifa1g10933 477 SMART WD40_4 319 358 IPR001680 GO:0005515
Vifa1g10933 477 SMART WD40_4 414 454 IPR001680 GO:0005515
Vifa1g10933 477 SMART WD40_4 275 315 IPR001680 GO:0005515
Vifa1g10933 477 SMART WD40_4 369 409 IPR001680 GO:0005515
Vifa1g10933 477 SMART WD40_4 230 272 IPR001680 GO:0005515
Vifa1g10933 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 281 IPR001680 GO:0005515
Vifa1g10933 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 418 IPR001680 GO:0005515
Vifa1g10933 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 414 - -
Vifa1g10933 477 Gene3D - 326 474 IPR015943 GO:0005515
Vifa1g10933 477 Pfam Anaphase-promoting complex subunit 4 WD40 domain 238 296 IPR024977 -
Vifa1g10933 477 ProSitePatterns Trp-Asp (WD) repeats signature. 259 273 IPR019775 -
Vifa1g10933 477 FunFam Transducin/WD40 repeat-like superfamily protein 62 320 - -
Vifa1g10933 477 Pfam WD domain, G-beta repeat 374 409 IPR001680 GO:0005515
Vifa1g10933 477 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Vifa1g10933 477 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Vifa1g10933 477 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Vifa1g10933 477 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 468 IPR044285 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10933 Vifa-Chr1 1843693593 1843697653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10933 257 454 U-box Gene Family AT2G33340 27.451 5.81e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10933 K14791 - gmx:100807947 697.582