Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10917 ATGGAACTATCAGATTTGCAAAACAACAAACAGAAGAGAGGCACCACCACTCTTCCCCACCACCAACACCACCAACAACAACAACAACAAGAATCTTCACCTTCAAATTCTCATTCTCAGCAACTTGTGGTCCCTTTTGATGGAAGGTCATCACCTTTTATTATGGGCTCCATCTCCAATATTCAACCTTCTTCAAACTCTTCATCCTCTTCTTCTTCAAACTCTTCGTCGTCTTCGGCTTCGGCTTCGGCTTCTGCAACTACTCCTCATCTTATTGACGCTTCTCTGGCAATCGCCACCAGATCTGAACCTCCGGTACTCGACTCCAACACTCAGATTCAACAATTCTCTTCTTCATCCACAGCCGTCACGGTAGCAAATCCTCCCAAACGATCCACCAAGGACAGACATACTAAAGTCGATGGCCGGGGACGAAGAATTCGAATGCCGGCGACCTGTGCAGCCAGAGTTTTTCAGTTGACCAGAGAATTAGGTCATAAATCCGACGGTGAAACAATTGAATGGCTTCTCCAGCAAGCGGAGCCGGCTATTATTGCCGCCACCGGCACAGGAACAATTCCAGCTAATTTCTCAACGCTCAATGTTTCACTTCGAAGCAGCGGCTCCACGCTGTCGGCGCCGCCGTCGAAATCAGCTCCTCATAGTTTTCACAGCGCGCTTGGACTGGCGGCGCACCATCCGTACGAAGAAGCTGCCTACCAACACCAACACGCGCCTCTTCTAGGGTTTCATCCTCATCAACACCAGCAACATCTCATGAACGCCGATCAAATCGGTGAAGCGCTTTCGAATGAGAATTACATGAGAAAACGCTATAGAGAAGATCTTTTCAAAGACGATAACAACAACAACAACAACGAAAGCGGTGGCGATGGTTCTTCTTCTCCAAAAAATTTCAAAACAAATCACCAGCAAGACGGTATGGGTGAAGGAGAAGGTGGTGGAGTTGGAGCCTCTTCATCTTCTTCTCCTGGTAATTCTATTTCTGGACTTCTTCGACCGTCGAATATGTTACCGGCAACGGCCATGTGGGCCACCGCAGGTAGTGGAAGTACAATATGGATGGTACCAGTGAGTGGTGGTGCTGCAAACACAAATTCAGAGACACAAACACAAAATATGTGGCCTTTTAGTCCTCACACTCAGTCTCAACATCAAGCGAACACTACTGCAACTCCATCTCAGTTACATTTCATGCCAAGGTTCAACGTTCCTCCCGGTGGCGGAGGCGGCCTTGAATTCCAAGGTGGACGCGGCGGTTTACAACTCGGTTCAGTGTATCAACCATCACAGCATCTTGGATTAGCAGTGTCTGATTCAAACTTGGGTATGTTGGCTGCTCTTAATGCTTACACGAGAGCTGGTCATTTCAATGTTAACAACTCTTCTTCTGATAATCATCACCATCACCACCATTCAATTTCAATGGACTCTCATCCTCCACAACCTAATGATGAAAGTGGAGAAGATGCTCCTAATAATTCTCAATAA 1512 0.4702 MELSDLQNNKQKRGTTTLPHHQHHQQQQQQESSPSNSHSQQLVVPFDGRSSPFIMGSISNIQPSSNSSSSSSSNSSSSSASASASATTPHLIDASLAIATRSEPPVLDSNTQIQQFSSSSTAVTVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHSALGLAAHHPYEEAAYQHQHAPLLGFHPHQHQQHLMNADQIGEALSNENYMRKRYREDLFKDDNNNNNNESGGDGSSSPKNFKTNHQQDGMGEGEGGGVGASSSSSPGNSISGLLRPSNMLPATAMWATAGSGSTIWMVPVSGGAANTNSETQTQNMWPFSPHTQSQHQANTTATPSQLHFMPRFNVPPGGGGGLEFQGGRGGLQLGSVYQPSQHLGLAVSDSNLGMLAALNAYTRAGHFNVNNSSSDNHHHHHHSISMDSHPPQPNDESGEDAPNNSQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10917 503 MobiDBLite consensus disorder prediction 283 339 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 484 503 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 53 84 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 1 84 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 289 312 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 323 339 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 106 128 - -
Vifa1g10917 503 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 452 IPR005333 GO:0003700
Vifa1g10917 503 MobiDBLite consensus disorder prediction 466 503 - -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 1 46 - -
Vifa1g10917 503 Pfam TCP family transcription factor 132 282 IPR017887 -
Vifa1g10917 503 MobiDBLite consensus disorder prediction 106 143 - -
Vifa1g10917 503 ProSiteProfiles TCP domain profile. 133 187 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10917 Vifa-Chr1 1841260227 1841261738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10917 130 448 TCP Transcription Factor Family AT1G35560 44.785 4.16e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g10917 TCP 4.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10917 - - adu:107482753 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10917 1 1841260227 1841261738 Vifa1g10917 1 1841260227 1841261738 ECH