Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10909 ATGGAGAAATACGAGCTGGTTAAGGATATAGGTTCTGGGAATTTCGGTGTTGCTAGACTCATGCGTCACAAACATACCAATGAACTCGTTGCCATGAAATTCATTCAACGAGGCCACAAGATTGATGAGAATGTTGCTAGGGAAATAATTAACCATAGAAGTCTTCGTCATCCTAATATTATTCGCTTCAAGGAGGTGGTTTTGACTCCTACTCATCTTGGTATAGTTATGGAGTATGCTGCTGGTGGAGAGCTCTTTGAGCGAATTGTCTCTGCCGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGCCATTCCATGCAAATCTGCCATCGCGACTTGAAACTTGAGAACACGTTATTGGACGGTAACCCTGCCCCACGCCTCAAAATTTGCGATTTTGGTTATTCTAAGTCCTCTCTGCTGCATTCTAGGCCTAAATCAACAGTGGGAACTCCAGCTTACATAGCACCAGAGGTTCTTTCACGTAAAGAATATGATGGAAAGTTGGCAGATGTATGGTCATGTGGAGCGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCCAGACGATCCCAAAAATTTCAGGAAAACCATTAATAAAATTATGGCTATTCAATACAAGTTTCCGGATTATGTTCATTTATCTGAAGATTGTAAACATCTGCTGTCTCACATTTTCGTGGCAAGTCCAGCTAGGAGAATCACCATCAAGGAAATCAAGTCTCATGCATGGTTTTTAAAGAATTTGCCTCGAGAATTGACCGAAATGGCTCAAGCTGTTTACTACAAAAAAGAAAATCCAACTTATTCTCTTCAGAGCATTGAAGACATTATGAGTATTGTTGAGGAAGCTAAATCCCCGCCTCAAGTGTCTAGGTCAATTGGGGGGTTTGGCTGGGGAGGAGTAGAAGATAACGATGAAACAAAAGAAGCCGAGGCAGAGGTGGAAGAAGATGAATATGAAAAGAGAGTCAAGGAAGCACATGAAAGTAGAGAATTCAATTTCAACTAA 1056 0.4176 MEKYELVKDIGSGNFGVARLMRHKHTNELVAMKFIQRGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERIVSAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRKEYDGKLADVWSCGATLYVMLVGAYPFEDPDDPKNFRKTINKIMAIQYKFPDYVHLSEDCKHLLSHIFVASPARRITIKEIKSHAWFLKNLPRELTEMAQAVYYKKENPTYSLQSIEDIMSIVEEAKSPPQVSRSIGGFGWGGVEDNDETKEAEAEVEEDEYEKRVKEAHESREFNFN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10909 351 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vifa1g10909 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vifa1g10909 351 SUPERFAMILY Protein kinase-like (PK-like) 1 305 IPR011009 -
Vifa1g10909 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10909 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10909 351 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Vifa1g10909 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vifa1g10909 351 PANTHER SERINE/THREONINE KINASE 2 300 - -
Vifa1g10909 351 MobiDBLite consensus disorder prediction 306 351 - -
Vifa1g10909 351 MobiDBLite consensus disorder prediction 331 351 - -
Vifa1g10909 351 CDD STKc_SnRK2 3 259 - -
Vifa1g10909 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vifa1g10909 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa1g10909 351 Coils Coil 325 345 - -
Vifa1g10909 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10909 Vifa-Chr1 1840462818 1840464541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10909 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 44.074 1.26e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa1g10909 Pkinase 9.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10909 K14498 - gmx:100812259 623.624