Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10907 ATGCGACGGGTTTCCTCATTTCCATTTTTCAAATCGCTCAAACCACCAATCGAATGCGCTCTTGTTGTTGTTCGTATTCAAATCATGCAACAAGGTAATTCATCCAAGAGTCTTCAGATTCCGCAGCTCAATTGGTTGCAGCATACTACTGCTCATCAGAATTTCTCTTCCCAGGCCAAATTTTTGAGCTCCAATTTCCTCTTTTCCGTCCCGACTAAGAAGCCAGAAGACCGGTCTCGTAATAGCAGGTTTGTAGTCCGACAAGGTCAAAATATTCCAAGTTCACAAAGAGGACAAGTTGATAAGGCCTGGCTTGCTCTTCCAAGCCTACAGACATCTAGCAGGAATTACATCCAACCCGGAAAGCATGTTAAAGTTACTTCTCAGTTTCACAACGACAAGACAACAACTTCCTTACAAGGAAACAATGAGAATGACAAACTTAACCGTTCTAATGTCACAACAACTCCAACTGTCATTTATAATACCTCTCGGGTTGTAGATAGTTCAGTGAACAATCACACAACGTACACAAGCCAACCCAAAGAGTCTACACAATTTGTAGCTGGTAATATTAATATTGATGACGATGACATACTCGAGAGCATTGATGTTGATCAAATTGTTGAGAAATACCAGTCCTCATGCACTCCTCAACCCCCGATGTCCAAGTTTCCTTCTATTGTACCAACTCCAGATAAGGATAACTTTGCTGGACAGGGAGATACTTTTTTGCCACCAGAGCTGTGCTTGGATTGCACCCACGGATGCAAGTTAGGGCTATGCTCTGAAGCAGGAAGTCATTTGAAGGAATTCAAGGATAATCTTATTGCAATCTCTAATGAACTGCTTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGAAAAGCTTCGCCAAGACAGGTCACAGCTGAATAAGCAAATTCAACAGCTTGAAAAATATATTCATTCCAGTAATGTTGAAGAAGAAAGACAAAAGTCACATTTTGCTAGATCCATGGCACCACCTACATCTTCTGTGTATGAAACACCCCAGCGAAATGTCATCAGCAGTGGACCAAATGGATATGATGCCCAGTCTGATATAGGTAATGGGACATATGAGCCATCGTACCAGTCTACGTTCTTTTCTGCAGACATGTCTGGCATGCCACCAGGTCCAGTAGAGAGGGAGCCATTCATCCCAAAGATTATTGATGTTAATTATAGTGAAGGCTGTGGAGATAGACAGTGGAGCAGTCGGGATTTTTCTTGGACTAGAGAATTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATTATTAATGCCACGATGAAGGGATGTGATGTTTTTGTTTTGATGCCCACAGGCGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTTATTAATCCAGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACTTATTGCAGGCAAATATACCTGCTACTTACTTAAGTGCCAATATGGAATGGACTGAACAACAGGAGATCCTTAGAGAACTTAATTCTGATTATTGTAAATATAAGTTGTTATATGTGACACCCGAAAAGATTGCCAGAAGTGACAATCTTCTGCGACACTTGGAAAGTTTATATTTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTCGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACTGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTACGGTATTCTGTTGTTCCCAAGACCAAAAAGTGTTTGGAGGATATTGACAAATTTATTAGGGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGCTGCTGAAAAATTACAGGAATATGGGCATAAATGTGCATTTTATCACGGGAATATGGATCCTGCTCAACGTTCTTTTATTCAAAAACAATGGAGCAAAGATGAAATCAATATAATTTGCGCTACTGTTGCATTTGGAATGGGGATTAACAAACCCGATGTCCGCTTTGTAATCCATCACTCCCTCCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAGCCTGCATCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGTGTAGGAATGGTGGAGCAAAGTCCCATGACATCTGGATACAGTCGTTTAAATGCGACTAATCCAGGAAGGTTACTGGAGACAAACACCGAAAACCTTTTGTGCATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCTTTATTCAGCTTGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGCATGAAGGTCACAAGTTTCATTGAGAAGGATGTTACCGAAACAGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCGGCATCTCATATATTAGAGGTTTATCGTGGTTCCTTAAACCAGATGGTCAAGAAACACCGACACGAGACTGTGCGCCTTCATGGTGCCGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGATTTTCTTGCGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGCAGAAGGTCCGTAATGGATTATTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCCTTGAAATGTGATTTAACACCAGCCAGAGGTTCTCTGACATCTGCGAAGCTGAATCTTCCCATTGATATTCCTGACGAACCTCAAACTGAAGTAGACTTGAATCTTTCAGCTAAGTTGTACACTGCTCTGCGGATGTTGCGGCAAGCTTTCTGTAGAGAAGCTGGAGACTCTGTTTATGGTCACCACATATTTGCCAATACCACGTTGCAGCAGATAAGCAAGAAAATACCGAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTGGCAAGGTTAAAATAAACAATTATGGGGATCGGTTACTTGAAACCATCGAGAATACCATATACGAATACTACAATCCAGATAAAAACAGCAGTGGCAGCAAAGGCAGCTCTGATTCGGCCAAAAGAAGACGAGAGGCAAATAAAGACCCAGATTCAAATGCCGAGGATGATGAGGTCTTAATCCAAAGCAGCGGTCCCTCCAAGAAAAGGACGGTAAAGAAACAAACCAGGAAGGTTGTAATATATGATTCAGAAGAAGAGGAAGATTATTTCCATGGGTGCCTTGATGAGGACCTAGACTGTGTCAACATTGAAAACATCGTAATAGATAAAGTAACTGTTACAAATCCTGCAGGAAGAGTACTACCTCAATGGACATCATCTTGA 3564 0.4068 MRRVSSFPFFKSLKPPIECALVVVRIQIMQQGNSSKSLQIPQLNWLQHTTAHQNFSSQAKFLSSNFLFSVPTKKPEDRSRNSRFVVRQGQNIPSSQRGQVDKAWLALPSLQTSSRNYIQPGKHVKVTSQFHNDKTTTSLQGNNENDKLNRSNVTTTPTVIYNTSRVVDSSVNNHTTYTSQPKESTQFVAGNINIDDDDILESIDVDQIVEKYQSSCTPQPPMSKFPSIVPTPDKDNFAGQGDTFLPPELCLDCTHGCKLGLCSEAGSHLKEFKDNLIAISNELLDNVENLSSVQIEKLRQDRSQLNKQIQQLEKYIHSSNVEEERQKSHFARSMAPPTSSVYETPQRNVISSGPNGYDAQSDIGNGTYEPSYQSTFFSADMSGMPPGPVEREPFIPKIIDVNYSEGCGDRQWSSRDFSWTRELEVNNKKVFGNHSFRPNQREIINATMKGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKIARSDNLLRHLESLYFRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKAAEKLQEYGHKCAFYHGNMDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPASCVLYYSYSDYIRVKHMLSVGMVEQSPMTSGYSRLNATNPGRLLETNTENLLCMVSYCENDVDCRRFIQLVHFGEKFDSSTCQKTCDNCMKVTSFIEKDVTETAKQLVELVKLTGQKVSASHILEVYRGSLNQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLAEEVKKSDFYGSVSSVLKVNEQKVRNGLFGGQRIILRFPSSVKASKPLKCDLTPARGSLTSAKLNLPIDIPDEPQTEVDLNLSAKLYTALRMLRQAFCREAGDSVYGHHIFANTTLQQISKKIPRTKEELLDINGIGKVKINNYGDRLLETIENTIYEYYNPDKNSSGSKGSSDSAKRRREANKDPDSNAEDDEVLIQSSGPSKKRTVKKQTRKVVIYDSEEEEDYFHGCLDEDLDCVNIENIVIDKVTVTNPAGRVLPQWTSS 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10907 1187 SUPERFAMILY HRDC-like 1006 1079 IPR010997 GO:0000166|GO:0044237
Vifa1g10907 1187 SMART RQC_2 852 963 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa1g10907 1187 SMART helicmild6 669 750 IPR001650 -
Vifa1g10907 1187 Pfam Helicase conserved C-terminal domain 643 749 IPR001650 -
Vifa1g10907 1187 Coils Coil 295 315 - -
Vifa1g10907 1187 ProSiteProfiles HRDC domain profile. 1003 1085 IPR002121 GO:0003676
Vifa1g10907 1187 NCBIfam RecQ family ATP-dependent DNA helicase 428 903 IPR004589 GO:0004386|GO:0006310
Vifa1g10907 1187 MobiDBLite consensus disorder prediction 1083 1133 - -
Vifa1g10907 1187 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 558 567 IPR002464 -
Vifa1g10907 1187 ProSiteProfiles Rhodanese domain profile. 659 701 IPR001763 -
Vifa1g10907 1187 MobiDBLite consensus disorder prediction 1096 1114 - -
Vifa1g10907 1187 Pfam RQC domain 849 965 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa1g10907 1187 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 444 619 IPR014001 -
Vifa1g10907 1187 PANTHER DNA HELICASE RECQ FAMILY MEMBER 409 1094 - -
Vifa1g10907 1187 SMART hrdc7 1003 1085 IPR002121 GO:0003676
Vifa1g10907 1187 Gene3D - 627 846 IPR027417 -
Vifa1g10907 1187 MobiDBLite consensus disorder prediction 332 356 - -
Vifa1g10907 1187 Gene3D - 401 626 IPR027417 -
Vifa1g10907 1187 Gene3D HRDC domain 1000 1083 IPR044876 -
Vifa1g10907 1187 CDD DEXHc_RecQ 427 626 - -
Vifa1g10907 1187 FunFam ATP-dependent DNA helicase RecQ 409 626 - -
Vifa1g10907 1187 SMART ultradead3 432 635 IPR014001 -
Vifa1g10907 1187 Pfam HRDC domain 1007 1075 IPR002121 GO:0003676
Vifa1g10907 1187 CDD SF2_C_RecQ 627 759 - -
Vifa1g10907 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 768 IPR027417 -
Vifa1g10907 1187 FunFam Bloom syndrome, RecQ helicase 627 847 - -
Vifa1g10907 1187 MobiDBLite consensus disorder prediction 328 356 - -
Vifa1g10907 1187 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 805 IPR001650 -
Vifa1g10907 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 893 IPR027417 -
Vifa1g10907 1187 Pfam RecQ zinc-binding 762 842 IPR032284 -
Vifa1g10907 1187 Gene3D - 850 960 IPR036388 -
Vifa1g10907 1187 Pfam DEAD/DEAH box helicase 438 606 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10907 Vifa-Chr1 1840419167 1840426511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10907 658 767 Eukaryotic Initiation Factors Gene Family AT3G19760 24.545 2.56e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10907 K10901 - gmx:100800006 1681.38