Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10901 ATGGAGATCAATATCAGTTCATATGATTCTTCTAGCTTGAACAGCAAGCAACATCATGATGGTAAAGAAGATTATACATCATCTTCTTCATTCAATCTAAGGAATGTTTCAAAACTTATTATTCCACCACTTGGTGTTCCTAAAGAGAATCAAGTTTACTCAAGATGGATCATTTTACCAATGGATTCTAGATACAGGTGGTGGGAGAGTTTTATGGTTGTATTGGTAGCATATACTGCATGGGCTTATCCATTTGAAGTTGCATTCATGCATTCTTCAAATAGGGAGCTATATATTGTGGACAATATTGTTGATCTTTTCTTTGCCATTGATATTGTGATGACTTTCTTTGTGGCATTCATTGATGGAACTACTCATCTACTTGTCAGAGATTCCAAAAAAATTGCTGTTAGGTAA 417 0.3453 MEINISSYDSSSLNSKQHHDGKEDYTSSSSFNLRNVSKLIIPPLGVPKENQVYSRWIILPMDSRYRWWESFMVVLVAYTAWAYPFEVAFMHSSNRELYIVDNIVDLFFAIDIVMTFFVAFIDGTTHLLVRDSKKIAVR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10901 138 Pfam Ion transport protein 65 121 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g10901 138 SUPERFAMILY Voltage-gated potassium channels 60 119 - -
Vifa1g10901 138 MobiDBLite consensus disorder prediction 1 28 - -
Vifa1g10901 138 PANTHER POTASSIUM CHANNEL AKT1 31 138 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10901 Vifa-Chr1 1838378911 1838379401 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10901 17 138 Ion Channels AT4G22200 63.780 3.91e-47 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10901 K21867 - gmx:100798422 179.874