LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g10900	ATGCTCAGATTTTGGAGAATCAGACGTGTTAAACAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTCTCAATTCATTGTGCTGGTTGTCTCTACTACATGCTAGCTGATAGGTACCCTCATAAAGGAAAAACATGGATTGGAGCTGTCATTCCAAATTTCAAAGAGACAAGTCCTAGAACCAGATATATTTCAGCCATCTATTGGTCCATCACCACGATGACAACCGTTGGTTATGGTGATCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTATATGCATTTCAATCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAATAGCATTGAAGCAGCATCAAATTTTGTGTACCGAAATCGCTTGCCACCAATGTTAAAAGAACAGATTCTTGCTTACATGTGTTTGAGATTTAAGGCAGAGAGGTTGAATCAACATCAGTTAATTGAACAGCTGCCAAAATCAATTTGCAAAAGCATTTGCCAGCATTTGTTTTTTCCAACTGTGGAGAAAGTCTATCTCTTCAAAGGTGTCTCAAAAGAAATCCTTTTGTCCCTAGTTGCGAAAATGAATGCTGAATATATACCACCTAAAGAGGACGTTATAATGCAAAATGAAGCAGCAGAAGATGTTTACATTATAGTGTCCGGAGAAGTAGAGATCATAGATAGTGTTATTGAGAAAGAGATAATTTTAGGGACTCTAACTACCGGAGACATGCTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAAAGCTATACATATAGAACCAAGACTTTCACAGAGCTTCTGAGGTTGAAAACCGGTGCTCTTATAGAAGCAATGCAGATTAAAAAAGAAGATAATATATTAATACTCAAAAATTTCCTTCAGCATTTTAAGGAGCTTAAGGATTTGAGTATCAAAGATGTAATGATGGAGAATATTGAAGAAGAGGAACCTAACATGGCTGTGAATTTGTTAACTGTGGCTGGCACAGGTAATGCTGCTTTTCTAGAGGAGCTTCTGAGAGCTGGTTTGGATCCTGATATTGGAGACTCTAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGACATGAAGAGTGTGTTAAAGTGTTGCTGAAACATACATGCAACATACATATAAAAGATATGAATGGTAACACTGCACTATGGTATGCAATAGCTTCAAAACATTACTCAATCTTCAGAATCCTCTATCAGCTATCTGCACTTTCTGATCCATACACAGCAGGAAATCTCCTATGTCTAGCAGCAAAAAGAAACGATTTAACCGTGATGAACGAGCTTTTAAAGCAAGGACTAAACATCGACTCAAAAGATGGACACGGCATGAAACCTATACAAATTGCCATGACAGAAAATCTTGTTGACATGGTTCAGTTGCTTGTCATGAATGGCGCAAGTGTCCTTGACATGCATATTCCTGAATTTTCTGCATCAACCTTAATTGAACTGTTGCAGAAACGCGAAATCGGGCATTTAATTAATGTGAATGAGGCGATGCCTGGTGAGTTTGTATTAAAAGGTGAAAATCAAGAAGAAAAGAAACAAATTAGGGGAAGATATAATGGAGTAGAGTGTCCAAGAGTAAGCATATATAGAGGTCACCCTATAGTGAGAAGAGAAAAATGTTTCACTGAAGCTGGAAAGTTAATAAGGTTGCCTGATTCATTAGAGAAGCTCAAAATTATTGCAGGTGAAAAATTTGAGTTTGATGCAAGAGATGCAATTGTGACAAATGAAGAAGGAGCAGAAATTAACAGTATTGATGTGATAAGAGATAATGATAAACTTTTTATTGTTGAATAG	1926	0.3733	MLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHKGKTWIGAVIPNFKETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMHFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVYRNRLPPMLKEQILAYMCLRFKAERLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMNAEYIPPKEDVIMQNEAAEDVYIIVSGEVEIIDSVIEKEIILGTLTTGDMLGEVGALCCRSQSYTYRTKTFTELLRLKTGALIEAMQIKKEDNILILKNFLQHFKELKDLSIKDVMMENIEEEEPNMAVNLLTVAGTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDLTVMNELLKQGLNIDSKDGHGMKPIQIAMTENLVDMVQLLVMNGASVLDMHIPEFSASTLIELLQKREIGHLINVNEAMPGEFVLKGENQEEKKQIRGRYNGVECPRVSIYRGHPIVRREKCFTEAGKLIRLPDSLEKLKIIAGEKFEFDARDAIVTNEEGAEINSIDVIRDNDKLFIVE	641

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g10900	641	CDD	CAP_ED	209	312	IPR000595	-
	Vifa1g10900	641	SUPERFAMILY	Voltage-gated potassium channels	2	170	-	-
	Vifa1g10900	641	FunFam	Potassium channel KAT2	197	333	-	-
	Vifa1g10900	641	PANTHER	POTASSIUM CHANNEL AKT1	1	640	IPR045319	GO:0005249\|GO:0006813
	Vifa1g10900	641	SMART	ANK_2a	384	413	IPR002110	GO:0005515
	Vifa1g10900	641	SMART	ANK_2a	448	477	IPR002110	GO:0005515
	Vifa1g10900	641	SMART	ANK_2a	351	380	IPR002110	GO:0005515
	Vifa1g10900	641	SMART	ANK_2a	481	510	IPR002110	GO:0005515
	Vifa1g10900	641	SMART	ANK_2a	417	447	IPR002110	GO:0005515
	Vifa1g10900	641	SUPERFAMILY	cAMP-binding domain-like	136	327	IPR018490	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g10900	Vifa-Chr1	1838360496	1838363417	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g10900	1	389	Ion Channels	AT4G22200	75.064	0.0	615

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g10900	K21867		-	gmx:100798422	1055.43

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