Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10900 ATGCTCAGATTTTGGAGAATCAGACGTGTTAAACAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTCTCAATTCATTGTGCTGGTTGTCTCTACTACATGCTAGCTGATAGGTACCCTCATAAAGGAAAAACATGGATTGGAGCTGTCATTCCAAATTTCAAAGAGACAAGTCCTAGAACCAGATATATTTCAGCCATCTATTGGTCCATCACCACGATGACAACCGTTGGTTATGGTGATCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTATATGCATTTCAATCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAATAGCATTGAAGCAGCATCAAATTTTGTGTACCGAAATCGCTTGCCACCAATGTTAAAAGAACAGATTCTTGCTTACATGTGTTTGAGATTTAAGGCAGAGAGGTTGAATCAACATCAGTTAATTGAACAGCTGCCAAAATCAATTTGCAAAAGCATTTGCCAGCATTTGTTTTTTCCAACTGTGGAGAAAGTCTATCTCTTCAAAGGTGTCTCAAAAGAAATCCTTTTGTCCCTAGTTGCGAAAATGAATGCTGAATATATACCACCTAAAGAGGACGTTATAATGCAAAATGAAGCAGCAGAAGATGTTTACATTATAGTGTCCGGAGAAGTAGAGATCATAGATAGTGTTATTGAGAAAGAGATAATTTTAGGGACTCTAACTACCGGAGACATGCTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAAAGCTATACATATAGAACCAAGACTTTCACAGAGCTTCTGAGGTTGAAAACCGGTGCTCTTATAGAAGCAATGCAGATTAAAAAAGAAGATAATATATTAATACTCAAAAATTTCCTTCAGCATTTTAAGGAGCTTAAGGATTTGAGTATCAAAGATGTAATGATGGAGAATATTGAAGAAGAGGAACCTAACATGGCTGTGAATTTGTTAACTGTGGCTGGCACAGGTAATGCTGCTTTTCTAGAGGAGCTTCTGAGAGCTGGTTTGGATCCTGATATTGGAGACTCTAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGACATGAAGAGTGTGTTAAAGTGTTGCTGAAACATACATGCAACATACATATAAAAGATATGAATGGTAACACTGCACTATGGTATGCAATAGCTTCAAAACATTACTCAATCTTCAGAATCCTCTATCAGCTATCTGCACTTTCTGATCCATACACAGCAGGAAATCTCCTATGTCTAGCAGCAAAAAGAAACGATTTAACCGTGATGAACGAGCTTTTAAAGCAAGGACTAAACATCGACTCAAAAGATGGACACGGCATGAAACCTATACAAATTGCCATGACAGAAAATCTTGTTGACATGGTTCAGTTGCTTGTCATGAATGGCGCAAGTGTCCTTGACATGCATATTCCTGAATTTTCTGCATCAACCTTAATTGAACTGTTGCAGAAACGCGAAATCGGGCATTTAATTAATGTGAATGAGGCGATGCCTGGTGAGTTTGTATTAAAAGGTGAAAATCAAGAAGAAAAGAAACAAATTAGGGGAAGATATAATGGAGTAGAGTGTCCAAGAGTAAGCATATATAGAGGTCACCCTATAGTGAGAAGAGAAAAATGTTTCACTGAAGCTGGAAAGTTAATAAGGTTGCCTGATTCATTAGAGAAGCTCAAAATTATTGCAGGTGAAAAATTTGAGTTTGATGCAAGAGATGCAATTGTGACAAATGAAGAAGGAGCAGAAATTAACAGTATTGATGTGATAAGAGATAATGATAAACTTTTTATTGTTGAATAG 1926 0.3733 MLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHKGKTWIGAVIPNFKETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMHFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVYRNRLPPMLKEQILAYMCLRFKAERLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMNAEYIPPKEDVIMQNEAAEDVYIIVSGEVEIIDSVIEKEIILGTLTTGDMLGEVGALCCRSQSYTYRTKTFTELLRLKTGALIEAMQIKKEDNILILKNFLQHFKELKDLSIKDVMMENIEEEEPNMAVNLLTVAGTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDLTVMNELLKQGLNIDSKDGHGMKPIQIAMTENLVDMVQLLVMNGASVLDMHIPEFSASTLIELLQKREIGHLINVNEAMPGEFVLKGENQEEKKQIRGRYNGVECPRVSIYRGHPIVRREKCFTEAGKLIRLPDSLEKLKIIAGEKFEFDARDAIVTNEEGAEINSIDVIRDNDKLFIVE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10900 641 CDD CAP_ED 209 312 IPR000595 -
Vifa1g10900 641 SUPERFAMILY Voltage-gated potassium channels 2 170 - -
Vifa1g10900 641 FunFam Potassium channel KAT2 197 333 - -
Vifa1g10900 641 PANTHER POTASSIUM CHANNEL AKT1 1 640 IPR045319 GO:0005249|GO:0006813
Vifa1g10900 641 SMART ANK_2a 384 413 IPR002110 GO:0005515
Vifa1g10900 641 SMART ANK_2a 448 477 IPR002110 GO:0005515
Vifa1g10900 641 SMART ANK_2a 351 380 IPR002110 GO:0005515
Vifa1g10900 641 SMART ANK_2a 481 510 IPR002110 GO:0005515
Vifa1g10900 641 SMART ANK_2a 417 447 IPR002110 GO:0005515
Vifa1g10900 641 SUPERFAMILY cAMP-binding domain-like 136 327 IPR018490 -
Vifa1g10900 641 Pfam Cyclic nucleotide-binding domain 229 312 IPR000595 -
Vifa1g10900 641 Gene3D - 353 534 IPR036770 -
Vifa1g10900 641 SMART cnmp_10 209 326 IPR000595 -
Vifa1g10900 641 Pfam Ion transport protein 1 138 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g10900 641 Gene3D - 1 132 - -
Vifa1g10900 641 Gene3D Jelly Rolls 177 352 IPR014710 -
Vifa1g10900 641 PRINTS Ankyrin repeat signature 385 400 IPR002110 GO:0005515
Vifa1g10900 641 PRINTS Ankyrin repeat signature 464 478 IPR002110 GO:0005515
Vifa1g10900 641 SUPERFAMILY Ankyrin repeat 356 510 IPR036770 -
Vifa1g10900 641 ProSiteProfiles Ankyrin repeat profile. 384 416 IPR002110 GO:0005515
Vifa1g10900 641 ProSiteProfiles cAMP/cGMP binding motif profile. 209 328 IPR000595 -
Vifa1g10900 641 ProSiteProfiles KHA domain profile. 568 641 IPR021789 -
Vifa1g10900 641 Pfam Ankyrin repeats (3 copies) 362 439 IPR002110 GO:0005515
Vifa1g10900 641 Pfam KHA, dimerisation domain of potassium ion channel 567 639 IPR021789 -
Vifa1g10900 641 ProSiteProfiles Ankyrin repeat region circular profile. 384 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10900 Vifa-Chr1 1838360496 1838363417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10900 1 389 Ion Channels AT4G22200 75.064 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10900 K21867 - gmx:100798422 1055.43