Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10899 ATGGATTCTAGATACAGGTGTTGGGAGAGTTTTATGGTTGTTTTGGTAGCATATTCTGCATGGGCTTATCCTTTTGAAGTTGCTTTCATGCATTCTTCTCCAAATAGAAAACTATATATTGTAGACAATATTATTGATCTTTTCTTTGCCATTGACATTGTTATGACTTTCTTTCTGGCTTTCATTGATGGAACTACTCATCTTCTTGTCAGAGATTCCAAAAAAATTGTTGTCAGGTACTTGTCAACATGGTTCATAATGGATGTGGCATCAACAATACCCTATGAAGCAATAGGCTTTATTTTAACTGGCAAACACAAATTGGGCCTCCCTTACTTCCTCTTGGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAACAATTCTTCACAAGGCTTGAGAAAGACATAAGATTCAGCTATTTTTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTCTCAATTCATTGTGCTGGGTGTCTCTATTACATGCTAGCTGATAGATACCCTCATCAAGGAAATACATGGATTGGAGCTGTCATTCCAAATTTCAGAGAGACTAGTCCTAGAACCAGATACATTTCAGCCATCTACTGGTCCATAACTACCATGACAACCGTTGGTTATGGCGATCTTCATGCTGTCAACACCATGGAAATGATCTTCATTATTTTCTATATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACTATGGAATTCAGAAATAGCATTGAAGCTGCATCAAACTTTGTGTGCCGAAATAGGTTGCCTCCCAGGCTAAGAGAACAAATCCTTGCTTACATGTGTTTAAGATTTAAGGCGGAGAGGTTGAATCAACATCAGCTAATTGAACAGCTTCCGAAATCAATTTGCAAGAGCATTTGCCAGCATTTGTTTTTTCCAACTGTGGAGAAAGTCTATCTCTTCAAAGGCGTCTCCAAAGAAATCCTTTTGTCCCTCGTTGCGAAAATGAATGCGGAATACATACCACCAAAAGAGGATGTTATAATGCAAAATGAAGCAGCAGATGATGTTTACATCATAGTGTCCGGAGAAGTAGAGATCATAGATAGTGTTATAGAGAAAGAGAGAGTTTTAGGGACTTTAACAACAGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAAAGCTATACCTACAGAACCAAGACTCTTACACAGCTTCTGAGGTTGAAAACCAGCGCTCTTATAGAAGCAATGCAGATTAAAAAAGAAGATAATATACTAATACTCAAAAATTTTCTTCAGCATTATAAGCAGCTTAAGGATTTGAGTATCGAAGATTTAATTGTGGAGAATGTGGAAGAAGAAGATCCTAACATGGCTGTGAATTTGTTAACTGTGGCTGGCACAGGTAATGCTGCTTTTCTAGAGGAGCTTCTAAGAGCTGGTTTGGATCCTGATATTGGAGACTCTAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGACATGAAGAGTGTGTTAAAGTGTTGCTGAAACATACATGCAACATACATATAAAAGATATGAATGGTAACACTGCACTATGGTATGCAATAGCTTCAAAACATTACTCAATCTTCAGAATCCTCTATCAGCTATCTGCACTTTCTGATCCATACACAGCAGGAAATCTCCTATGTCTAGCAGCAAAAAGAAACGATTTAACCGTGATGAACGAGCTTTTAAAGCAAGGACTAAACATCGACTCAAAAGATGGACACGGCATGAAACCTATACAAATTGCCATGTCAGAAAATCTTGTTGACATGGTTCAGTTGCTTGTCATGAATGGCGCAAGTGTCCTTGACATGCATATTCCTGAATTTTCTGCATCGACCTTAAATGAGCTACTTCAGAAACGCGAAATTGGACATCTAATTAATGTGAATGAGGAAATGCCTAGTGAATTTGTATTAAAAGGTGAAAATCAAGAAGACCAGAAACAAGTTTGGAAAAGATGTAATGGAGTAGAGTTTCCAAGAGTAAGCATATATAGAGGTCACCCTATAGTGAGAAGAGAAAAAGGTTTCATTGAAGCCGGAAAGTTAATAAAGCTGCCTGATTCATTAGAAAAACTCAAAATTATCGCAGGTGAAAAATTTGAGTTTGATGCAAGAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGATAGTATTGATGTAATAAGAGATAATGATAAACTTTATATTGTTGAATAG 2274 0.3773 MDSRYRCWESFMVVLVAYSAWAYPFEVAFMHSSPNRKLYIVDNIIDLFFAIDIVMTFFLAFIDGTTHLLVRDSKKIVVRYLSTWFIMDVASTIPYEAIGFILTGKHKLGLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHQGNTWIGAVIPNFRETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLREQILAYMCLRFKAERLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMNAEYIPPKEDVIMQNEAADDVYIIVSGEVEIIDSVIEKERVLGTLTTGDMFGEVGALCCRSQSYTYRTKTLTQLLRLKTSALIEAMQIKKEDNILILKNFLQHYKQLKDLSIEDLIVENVEEEDPNMAVNLLTVAGTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDLTVMNELLKQGLNIDSKDGHGMKPIQIAMSENLVDMVQLLVMNGASVLDMHIPEFSASTLNELLQKREIGHLINVNEEMPSEFVLKGENQEDQKQVWKRCNGVEFPRVSIYRGHPIVRREKGFIEAGKLIKLPDSLEKLKIIAGEKFEFDARDAMVTNEEGAEIDSIDVIRDNDKLYIVE 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10899 757 FunFam Potassium channel KAT3 7 249 - -
Vifa1g10899 757 ProSiteProfiles Ankyrin repeat profile. 500 532 IPR002110 GO:0005515
Vifa1g10899 757 Pfam KHA, dimerisation domain of potassium ion channel 683 755 IPR021789 -
Vifa1g10899 757 Pfam Cyclic nucleotide-binding domain 345 428 IPR000595 -
Vifa1g10899 757 CDD CAP_ED 325 428 IPR000595 -
Vifa1g10899 757 Gene3D - 469 645 IPR036770 -
Vifa1g10899 757 PRINTS Ankyrin repeat signature 501 516 IPR002110 GO:0005515
Vifa1g10899 757 PRINTS Ankyrin repeat signature 580 594 IPR002110 GO:0005515
Vifa1g10899 757 Pfam Ion transport protein 6 254 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g10899 757 PANTHER POTASSIUM CHANNEL AKT1 2 756 IPR045319 GO:0005249|GO:0006813
Vifa1g10899 757 Gene3D Jelly Rolls 293 466 IPR014710 -
Vifa1g10899 757 ProSiteProfiles KHA domain profile. 684 757 IPR021789 -
Vifa1g10899 757 SUPERFAMILY Ankyrin repeat 461 624 IPR036770 -
Vifa1g10899 757 ProSiteProfiles Ankyrin repeat region circular profile. 500 531 - -
Vifa1g10899 757 SMART cnmp_10 325 442 IPR000595 -
Vifa1g10899 757 Pfam Ankyrin repeats (3 copies) 478 555 IPR002110 GO:0005515
Vifa1g10899 757 FunFam Potassium channel KAT2 313 449 - -
Vifa1g10899 757 SUPERFAMILY Voltage-gated potassium channels 2 248 - -
Vifa1g10899 757 SMART ANK_2a 500 529 IPR002110 GO:0005515
Vifa1g10899 757 SMART ANK_2a 564 593 IPR002110 GO:0005515
Vifa1g10899 757 SMART ANK_2a 467 496 IPR002110 GO:0005515
Vifa1g10899 757 SMART ANK_2a 533 563 IPR002110 GO:0005515
Vifa1g10899 757 SMART ANK_2a 597 626 IPR002110 GO:0005515
Vifa1g10899 757 Gene3D - 6 248 - -
Vifa1g10899 757 SUPERFAMILY cAMP-binding domain-like 252 444 IPR018490 -
Vifa1g10899 757 PRINTS EAG/ELK/ERG potassium channel family signature 239 248 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10899 757 PRINTS EAG/ELK/ERG potassium channel family signature 53 62 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10899 757 PRINTS EAG/ELK/ERG potassium channel family signature 42 52 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10899 757 PRINTS EAG/ELK/ERG potassium channel family signature 221 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10899 757 PRINTS EAG/ELK/ERG potassium channel family signature 195 212 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g10899 757 ProSiteProfiles cAMP/cGMP binding motif profile. 325 444 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10899 Vifa-Chr1 1838248372 1838255525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10899 1 505 Ion Channels AT4G22200 75.246 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10899 K21867 - gmx:100798422 1275.77