Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10897 ATGCGCTTTCAACATTTAGAGTCTTTATCCTTATGTGGTTGTACGGAGCTCAATGATTCAGGATTAACCCGTCTGCTAAGCTATGGTTCGAATTTACAGAAACTTAATCTAGATTGTTGTTTGAAAGTTACTGATTACGGGCTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGACGTCAATTAGTCTCTATCGGTGTATCAACATTTCTGATGACGGATTAGAGACTTTAGCCACTGCTTGTTTATCTTTGAAATGCATAAACCTCTCGTACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGAGGTGTCGTCAGCTTCAGGCAGTTAACATATCACACTGTGAGAGTATAAGAGGTGTTGGCTTCAAAGGGTGTTCAAAATCTCTCACACATGTAGAGGCTTGGTCTTGTAAGCTCAACCCAGAAGGGGTGACGGGAATAATTAGTGGCGGTGGTATAGAGTATCTAGACGTATCTTGTTTAAGTTGGTATCCCTTAGGAGATACCTTGCTTGGAATAAGATTGTCCTCAAACCTCAAAGTCCTTAACTTTCGAATGTGCAGATCTGTTTCCGATACTTCTATTGTTGCAATAGCCATGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGGATATCTGGATGGCAAGCAGTGGGGTTATATTGTCAGAATTTGAAGAGACTGCATGTTAATCGATGCCGTAATCTCAATGATAATGGCCTGCAGGCATTACGAGACGGTTGCAGAAGTCTCTCGGTTTTGTACTTGAATGGTTGTGTTCACGTGACTCCTTTTGCATTAGAGTTATTCAAGTCTCACAGAGCAAATGTTTGTATAAAGGATGAAGAGGTTACCTGTGGAGGTTGTCAGAGTGCTCACACAGCTGCTATTGCTGTTCTGTGTGCTGAGAGAGGAATTACGTCACATCTGCTTCTACGAGGAGAGCAGCCTGAAATCTTGACTGGCTATAACTTGATGTCTACAATATATGGAAATGTCACATATGTTCCGAGAACTATGTACGCCAACAGGGAAGAAATGCTAAAGAACTATGCTAGGTCAGTGGCCGGAAACAGTGGTGCTTTCCTATGGTTCAATGATATCATTCAAGCTTCTTCAACAGGCGAATTGTCTACTTCTCAAAATTTTACGAAAATGGACGCAAGTAGAAGTGAGAGAAACCATCTTCAAAAGATTTTAGTTGTCAACGAAGGGGCTGGTGATTCTGTTGCTCTACTAGGTATTATTCGGTTAGTGCAATACTTATCACAAAATCATTTACTTGGGAAACAAAGAGCCACAAAATTTGTCGTTGATGCTGGTACTGGCACAACAGCTATTGGTATAGGACTTGCAGCCATTTTCTTTGGACTTCCGTGGGAGGTACACGCGGTTATGCTGGCAGATAAAATTGATGGGTACCGAAAGCAGGAAAAGCACTTGATTGTTGAATTCAGTAAGCATTTCAATGTTGAGTTTCTTGACCACGACGTAAACAAAGAAGATGCTGGGATTGTGCATTGGGTGGAACGTGACCGTCCAAGAAAGTTACAGATTCAATTTTGCGCTGCTTACATTTTCATCGGGGTTGTTTGCATTCTTCTTTATTTTGGAGGTCAAAAGCAAAGAGTTGCAATTGGAAGAGCAATTTTGAAAGATCCAAAAATATTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCCGAGTGTGCATGTATTGATACTAACTTGTGCATTTGTATGTTCTTTTTAAACCTTGGTGATTTCCTTGTGCAGAAACTAGGGGAAGGTGTGAAAGGGGTGTATATCTCGATAGACGTGGATTGTCTTGATCCTGCATTTGCTCCGGGAGTGTCTCATATTGAACCGGGAGGTCTTTCTTTCCGCGATGTTCTTAACATCCTACACAATCTTCAAGGTGATGTTGTTGCTGGAGACGTCGTTGAACTCAACCCACAACGCGATACTGTTGATGGAATGACTGCTATGGTAGCTGCTAAGTTGGTCAGAGAAATGGCTGCAAAGATTGCAAAATGA 2067 0.417 MRFQHLESLSLCGCTELNDSGLTRLLSYGSNLQKLNLDCCLKVTDYGLSLVASGCPSLTSISLYRCINISDDGLETLATACLSLKCINLSYCSQISDKGLKALTQRCRQLQAVNISHCESIRGVGFKGCSKSLTHVEAWSCKLNPEGVTGIISGGGIEYLDVSCLSWYPLGDTLLGIRLSSNLKVLNFRMCRSVSDTSIVAIAMGCTLLEEWNLALCHEVRISGWQAVGLYCQNLKRLHVNRCRNLNDNGLQALRDGCRSLSVLYLNGCVHVTPFALELFKSHRANVCIKDEEVTCGGCQSAHTAAIAVLCAERGITSHLLLRGEQPEILTGYNLMSTIYGNVTYVPRTMYANREEMLKNYARSVAGNSGAFLWFNDIIQASSTGELSTSQNFTKMDASRSERNHLQKILVVNEGAGDSVALLGIIRLVQYLSQNHLLGKQRATKFVVDAGTGTTAIGIGLAAIFFGLPWEVHAVMLADKIDGYRKQEKHLIVEFSKHFNVEFLDHDVNKEDAGIVHWVERDRPRKLQIQFCAAYIFIGVVCILLYFGGQKQRVAIGRAILKDPKILLLDEATSALDAECACIDTNLCICMFFLNLGDFLVQKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQGDVVAGDVVELNPQRDTVDGMTAMVAAKLVREMAAKIAK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10897 688 Gene3D - 385 527 IPR036052 -
Vifa1g10897 688 Pfam ABC transporter 548 574 IPR003439 GO:0005524
Vifa1g10897 688 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 294 525 IPR027278 -
Vifa1g10897 688 Gene3D - 548 580 IPR027417 -
Vifa1g10897 688 Pfam Leucine Rich repeat 231 254 IPR001611 GO:0005515
Vifa1g10897 688 Pfam Leucine Rich repeat 81 103 IPR001611 GO:0005515
Vifa1g10897 688 SUPERFAMILY Arginase/deacetylase 598 684 IPR023696 -
Vifa1g10897 688 ProSitePatterns Arginase family signature. 614 635 IPR020855 GO:0016813|GO:0046872
Vifa1g10897 688 ProSiteProfiles Arginase family profile. 598 688 IPR006035 GO:0046872
Vifa1g10897 688 Gene3D Ureohydrolase domain 594 688 - -
Vifa1g10897 688 Gene3D Ribonuclease Inhibitor 1 153 IPR032675 -
Vifa1g10897 688 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 290 497 IPR036052 -
Vifa1g10897 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 580 IPR027417 -
Vifa1g10897 688 Gene3D - 286 375 IPR036052 -
Vifa1g10897 688 Pfam Arginase family 602 682 IPR006035 GO:0046872
Vifa1g10897 688 Gene3D Ribonuclease Inhibitor 157 285 IPR032675 -
Vifa1g10897 688 SMART LRR_CC_2 258 283 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 81 106 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 29 54 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 55 80 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 107 132 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 3 28 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 180 205 IPR006553 -
Vifa1g10897 688 SMART LRR_CC_2 232 257 IPR006553 -
Vifa1g10897 688 SUPERFAMILY RNI-like 2 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10897 Vifa-Chr1 1837879462 1837883469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10897 548 580 Calmodulin-binding Proteins AT2G36910 78.788 6.61e-09 57.4