Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10883 ATGAAGATTGTTCTTGTGTTTCCTTTCTTTCTGTGTATGATGAGTATTTCAGCAGCTCCTACTCCTTCTCCATCAACAACGTCATCATCCATATGTCCTATGGATCTTAACTATGTCCTAAGAATCCATTGGAACTCATCTTCTTGTCAAAATTTGAAGCCTCTAGAATCAAACACAAGCAATTGTTGCATATCACTTTTGTCTCTCTTTGGAATAGGATTAGCCCAACATCTAAAAGAAACCTCACAGTTCAATCTCCAAGACCTTCAAACTTCACTCTCATGCATGAAAGATTTTCAGTCAAAGCTCAATTCTTTATCACTTTCAAACAACCTTGTCAACTCTTGTTTTGACCCTCTTCAATTTGTTATCTCACCGAACATATGTGCAGGTATTGAAACGGTTCATGATTGGAATCAGAAGTTGGGTCAGAACACCAATCTGAATATTGCCTGTAAGCCAGATCTAACTGATCTTTCTCAGTGTGATGTTTGTTTAGCTGCTGGTTTACAGGTTAAGCAGAAGCTTGTTTCGATTGATGGTAATTCTTCTCATTCGTTGGATTGTTTCTACTTTGCAATTCTTTATGCTGCTGGGATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTACTTTTAGTTTACCTGTTTATTCACAAACTGGTTCTGGTTCTAAGAGTCGTCAGGGTCTTGTGTTCGGGTTAACCGGAGCTGGTGTTGCGTTGTTTGTTATGAGTTCTCTGTTGGGTTTATATGTTTGGTATGATAGGAAACGTATGAGGGAGAGAAAGCTTGAAACTTTTCAATTTGACTTTGATCCTGAGGAACAAGGCTCTAGGCGAAGGTTGAGACCGAATACCGGGTCGATTTGGTACAAAATTCAGGAACTTGAGAAAGCTACTGATAATTTTTCATCCAAGAATTTCATTGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCGGTTAAGAGGGTTTTGGAATCTGATTTTCAAGGGGATGCTGAGTTTTGTAATGAAGTTGAGATTATTAGTAATCTTAAGCATAGGAATTTGTTGCCTCTTAGAGGTTGTTGTGTGGTGGATGAGAGTGAGAATTATGGTGATAGAGGAAGTCAAAGATATCTTGTTTATGATTACATGCCGAATGGAAACCTCGAAGATCATCTTTTTGTGTCGAAGGATCCTTCGAAGCCGAACAAGTCGTTGACTTGGCCTCTAAGGAAGAACATAATCTTGGATGTAGCAAAAGGGTTGGCTTATTTGCATTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCTACCAATATTCTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTCGGACTTGCGAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGGGTGGCGGGGACTCACGGTTATCTAGCGCCGGAATACGCGCTTTATGGTCAACTGACTGAGAAAAGTGATGTGTATAGCTTTGGCGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTCGACTTGACTTCGTCAGGATCGCCACGGGCGTTCTTGATTACGGACTGGGCTTGGTCGTTAATAAAATCGGGGAAAATAGACGAGGCTTTGGATGCTTCTCTTTTGAAAGACGAAAAGAATGCTAGTTCAAATCCTAAGAGCATAATGGAAAGGTTTTTACTTGTTGGAATTCTGTGTTCTCATGTAATGGTCGCTTTGAGACCGACGATTTCAGACGCTTTGAAGATGTTGGAAGGCGATATCGAAGTTCCTCAAATTCCAGACAGGCCTATGCCTCTTGGACATCCTTCATTTTATAATAATGAATCCAACGGCAACACTTTTAGCATTTCTCCGGCGTTAAGCGGCCTCAAATTGCCCGCGGGAGACATGCTCAGGTCAACTAGTGAGAGATGA 1959 0.4109 MKIVLVFPFFLCMMSISAAPTPSPSTTSSSICPMDLNYVLRIHWNSSSCQNLKPLESNTSNCCISLLSLFGIGLAQHLKETSQFNLQDLQTSLSCMKDFQSKLNSLSLSNNLVNSCFDPLQFVISPNICAGIETVHDWNQKLGQNTNLNIACKPDLTDLSQCDVCLAAGLQVKQKLVSIDGNSSHSLDCFYFAILYAAGIVNEFGPESNGAVTCTFSLPVYSQTGSGSKSRQGLVFGLTGAGVALFVMSSLLGLYVWYDRKRMRERKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDESENYGDRGSQRYLVYDYMPNGNLEDHLFVSKDPSKPNKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLTSSGSPRAFLITDWAWSLIKSGKIDEALDASLLKDEKNASSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPSFYNNESNGNTFSISPALSGLKLPAGDMLRSTSER 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10883 652 FunFam probable receptor-like protein kinase At1g11050 270 391 - -
Vifa1g10883 652 SMART serkin_6 307 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10883 652 Pfam SPARK 27 190 IPR043891 -
Vifa1g10883 652 Pfam Protein kinase domain 309 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10883 652 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Vifa1g10883 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Vifa1g10883 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 621 - -
Vifa1g10883 652 SUPERFAMILY Protein kinase-like (PK-like) 288 599 IPR011009 -
Vifa1g10883 652 CDD STKc_IRAK 313 600 - -
Vifa1g10883 652 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 392 606 - -
Vifa1g10883 652 ProSiteProfiles Protein kinase domain profile. 307 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10883 652 Gene3D Phosphorylase Kinase; domain 1 278 391 - -
Vifa1g10883 652 Gene3D Transferase(Phosphotransferase) domain 1 392 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10883 Vifa-Chr1 1833564269 1833566745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10883 23 647 Receptor kinase-like Gene Family AT1G11050 63.898 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vifa1g10883 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10883 - - gmx:100806560 1036.94