Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10879 ATGAAGACTCAAGCCCACACCAACATCTACCGCCTATTCTTCTTGCACCAGACTGATTTGTTGAGGCAAATGAAATATTTGTTTCATACATACCTGCACCCGCTTCAACGTGATTCCACCATCTCAGAATCGACACTTCCGCAACAGTTCCAGTTTCGGAGTCCCGTTCAATTCGCCGAGGTGAAAGTAATGGATGAGGGAAAACATAAATCAAGAAAAGAAGACGTTGATTTGAAGAGGAGTCATCGTGATCGAGATCGAGATCGCGATAGAACTGGTGAACGAGGTAAGGATAAGGATAGAAGTGATGGCAGGCATAAGGATAATCGGGAGAAGAGGGATCGAGAGTTTCGAAGACATGATAGAGAGAAAAGTACTGATTCTGATGATAAGCATGATAGAGAGAAGGAGAAGCGGAGAGATGTTAAAGAGAAGGATCGGTCACGGGTTCATGATGTTGAGAGAGAAAAGGTGAGAGATAGAAAGAGGGAGAGAGATAGGGAAGAGAAAGAAAAGGAGAGAGTGAGGGAGAAAGAAAGAGATAGAGAAGAGAAAGAAAAGGAGAAACGGGATCATGAGAGAGAGAAGGAGAAGGAAAAGGAAAAGGAAAGAGATAAAGGGAGGAGAGGACGAGAGAGGGAGAAGCATAGAGATGTTGATAGTGAAAACAGTGATGGTGAGTTGAGGGAGAGAAATCGGAAGAGGCATAAGAAAGAGGACGAGGATTATAAGGGTAGAGAGAAGGAAAAGAGTTCTAGCAAATCAAACAGGAAAATTGAGGGACTTGATGCAAGCCCTAGAAGAAAGAGTGACGGGGATGACTCGGATTCTAAAGATAGAGAGAAAAAACCTACCCGTGAGGAGGAGATGGAAGATGAACAAAGGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGAAGAGTTCAAGAGTGGCAAGAGTTAAGGAGGAAGAAGGAAGAGGCGGAAAGAGAAAAGCAAGGTGAAGCAAGTGCCGCTGAACTTGAGTCGGGAAAGGCATGGACACTTGAAGGGGAGGAATCTGATGATGAAGAAGGAACAGGTAAACATACTCCTATGGACATAGATGAAGACGACAAAGTTGCTGATAAGGAACCTATAGAGTCGATGGTGGTAGATGTTGACCATGGAACAGTTGCGGCTGATTTACAAAATGGAGATACTGGTGCTCCTTCAGACGAGGAAATAGACCCATTGGATGCTTTTATGAATTCTATGGTGCTTCCTGAGGTTGAAAAGCTGAACAATGCTGTTAACTCAACACCTTCTGATAAAACTTCTGACTTGAAACCCAAAGATAAAGGGGACGAGCGTAGTAATGGCGGACAGTCAAGGAAAGGTTCAGGGAAGTCTATTGGCAGGATAATTCCTGGCGAAGAGTCCGACTCAGATTATGCAGATCCCGAAACTGACGAGGATCCAGTTGAAGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACGAAAGTTGAAAAACTTTCGATAGTTGACCACTCAAAGATTGACTACATACCATTCAAAAAGAATTTCTATATTGAAGTGAAGGAGGTCTCAAAGATGACTCTTGAAGAAGTTGCTTTATACAGGAAGCAGTTAGAGTTAAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAATATTGGATACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAGGCTCAAGCGTTGCCTGTAATTATGAGTGGCCGAGATTGCATAGGCATTGCCAAAACCGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTCTTGCAGGAGATGGACCTATAGGGCTTATTATGGCCCCTACAAGAGAGCTTGTTCAACAGATTCATAGTGATATAAAGAAGTTTACAAAGGTAATGGGTATCAGGTGTATCCCTGTCTATGGAGGCTCTGGTGTTGCTCAACAGATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGGAAAATAACTAACCTGCGTAGAGTCACCTATCTGGTCATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATAGTTCAAAATATTCGACCGGATCGTCAAACAGTGCTCTTCTCTGCTACTTTTCCCCGCCAGGTTGAAATTTTAGCTCGCAAGGTTTTGAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATTGCACAGTTAGTTGAAGTGAGGCCAGAAAATGAGAGGTTCCTACGACTCTTGGAACTACTTGGAGAATGGTACGAGAAGGGAAAGATTTTAATATTTGTCCACTCACAGGAGAAATGTGATGCCTTGTTCAAGGATCTACTCAGGCACGGTTATCCTTGTCTTTCTCTTCATGGAGCTAAGGATCAAACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGCGACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTACGTACATCGTGTTGGGCGCACTGGTCGTGCTGGCCGGAAAGGTTGTGCCATCACATTTATTTCTGAAGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAGATCCCTCGCCGATGGCTTTATGGCGAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGAAGAGGAAAGGAAAGCAGCCAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGACGAAGATGACGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCCTGCTCTTGCTCAGATTATTGCTGCAACAAAAGCAAATGCTCCCTCAATGCCTACTCCCATCTCTGCCACCCAACTGATTTCAAATGGTGGGCTACCTGTTTCTTTGCCTTCTGTTCTTGGTCTCCAGACTGCAACAGTCTTGCCTGGAACAGGGCTACCCCTTGCTACAAACGACGGGGCAGCTCGAGCTGCACTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCCGAGCTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAGTGGACTGGAGCTGCCATTACCACCAGGGGACAGTATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTATTTGTTCATCGAGGGTCCTAGTGAGAAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAATCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAG 3576 0.4416 MKTQAHTNIYRLFFLHQTDLLRQMKYLFHTYLHPLQRDSTISESTLPQQFQFRSPVQFAEVKVMDEGKHKSRKEDVDLKRSHRDRDRDRDRTGERGKDKDRSDGRHKDNREKRDREFRRHDREKSTDSDDKHDREKEKRRDVKEKDRSRVHDVEREKVRDRKRERDREEKEKERVREKERDREEKEKEKRDHEREKEKEKEKERDKGRRGREREKHRDVDSENSDGELRERNRKRHKKEDEDYKGREKEKSSSKSNRKIEGLDASPRRKSDGDDSDSKDREKKPTREEEMEDEQRRLDDEMEKRRRRVQEWQELRRKKEEAEREKQGEASAAELESGKAWTLEGEESDDEEGTGKHTPMDIDEDDKVADKEPIESMVVDVDHGTVAADLQNGDTGAPSDEEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKTSDLKPKDKGDERSNGGQSRKGSGKSIGRIIPGEESDSDYADPETDEDPVEEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEVSKMTLEEVALYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVLAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCIPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLRSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEEEERKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQIIAATKANAPSMPTPISATQLISNGGLPVSLPSVLGLQTATVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEKSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10879 1191 Gene3D - 764 937 IPR027417 -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 959 983 - -
Vifa1g10879 1191 Pfam Helicase conserved C-terminal domain 787 895 IPR001650 -
Vifa1g10879 1191 Coils Coil 158 205 - -
Vifa1g10879 1191 PANTHER RNA HELICASE 495 963 - -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 468 485 - -
Vifa1g10879 1191 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 708 716 IPR000629 -
Vifa1g10879 1191 Gene3D - 506 763 IPR027417 -
Vifa1g10879 1191 CDD DEADc_DDX46 542 763 - -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 339 367 - -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 63 331 - -
Vifa1g10879 1191 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 553 581 IPR014014 GO:0003724
Vifa1g10879 1191 SMART ultradead3 572 777 IPR014001 -
Vifa1g10879 1191 SMART helicmild6 814 895 IPR001650 -
Vifa1g10879 1191 FunFam probable ATP-dependent RNA helicase DDX17 515 765 - -
Vifa1g10879 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 911 IPR027417 -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 432 449 - -
Vifa1g10879 1191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 790 934 IPR001650 -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 419 489 - -
Vifa1g10879 1191 Coils Coil 287 331 - -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 63 367 - -
Vifa1g10879 1191 Pfam DEAD/DEAH box helicase 578 749 IPR011545 GO:0003676|GO:0005524
Vifa1g10879 1191 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 584 762 IPR014001 -
Vifa1g10879 1191 CDD KH-I_AtRH42_like 1089 1190 - -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 380 405 - -
Vifa1g10879 1191 CDD SF2_C_DEAD 774 904 - -
Vifa1g10879 1191 MobiDBLite consensus disorder prediction 952 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10879 Vifa-Chr1 1832175695 1832180938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10879 540 915 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 1.80e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10879 K12811 - gmx:100784306 1570.83