Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10868 ATGTCTCTCACGGGACGGCCTCGCGTTATTGTCAACGGTGTTCGAAGAATGAGAACCTTCCATTATTTTTGGTGTCTCAATTGCCAACGTACTGTCAGAATACCCTCAACAAATACTATTATGGATTATGGCTCTTTCTGTCCATATTGCTTCCATCAATTGCTGTATGAGCTTGATATATCAAGGCCAAGGCTTCTCATGAATAACCCTAATAACATGGAACCTCCTCCCACTACTAATCAGTTAATGGGTAGCTTAGCTTTCATTCTTGATCCATCTTTTAGAAGACAAAATCAAAATAACACAACACTACAATGGGAAACAGAACATGAACATGATCAAAATCAAAATCGAAATCCACAAACATGGATTACACTTCGATTTGTAAGACCAATTCGTCCACCAAGGCCTAATGCCCCACCACCATTGCAAAACTTGGTTCCTCGACTCAATGACAATGACACCCCTTCATTAGATGAGCTCTTTGATGGGGTAATTCACAACAACATCAGACCAGGGCCGCCTCCCGCGTCACCTTCCGCCATTGAAGCCTTACCAATGGTGAAAGTGACAGAAGCTCATTTGGCAAGCGACCCTAATTGTCCAATATGTAAAGATGAGTTTGAAGTTGATTTGGAAGTGAAAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCGTGGCTTCGCATGCACAACACTTGCCCTGTATGTCGCCACGAGCTACAAGGGATTGATAATAGTAACAATGCTAATTACTACTCTTTTCACAATGAGAATGAGTACGACGGATTCATTGGATTTGAGGAACTTACAAGCAACTTTATTTGGATTTGGAGCCAAATTGCTTCGATTAGGCCTATTCGTGCAGTTCTAGATTGGACGCGGTCCCATTTCAGTGGTCGTAATAGAAGTAATTCTTGGTGGCGAGCATTGCTCATTTCATAG 957 0.4201 MSLTGRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPSTNTIMDYGSFCPYCFHQLLYELDISRPRLLMNNPNNMEPPPTTNQLMGSLAFILDPSFRRQNQNNTTLQWETEHEHDQNQNRNPQTWITLRFVRPIRPPRPNAPPPLQNLVPRLNDNDTPSLDELFDGVIHNNIRPGPPPASPSAIEALPMVKVTEAHLASDPNCPICKDEFEVDLEVKELPCKHFYHSDCILPWLRMHNTCPVCRHELQGIDNSNNANYYSFHNENEYDGFIGFEELTSNFIWIWSQIASIRPIRAVLDWTRSHFSGRNRSNSWWRALLIS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10868 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 97 245 - -
Vifa1g10868 318 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Vifa1g10868 318 SMART ring_2 201 241 IPR001841 -
Vifa1g10868 318 FunFam E3 ubiquitin-protein ligase RING1-like 165 247 - -
Vifa1g10868 318 SUPERFAMILY RING/U-box 181 256 - -
Vifa1g10868 318 CDD RING-H2_RNF126-like 200 242 - -
Vifa1g10868 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 247 IPR013083 -
Vifa1g10868 318 Pfam Ring finger domain 200 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10868 Vifa-Chr1 1830025192 1830026238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10868 1 298 C3H Transcription Factor Family AT1G68180 34.437 2.64e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10868 K11982 - gmx:100793656 373.629