Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10858 ATGCCAAAATCCAAGAGAAACAAGCAAGTTACACTTTCAAAGACAACCAAAAAGGGTCGAGGTCACAAAGAAGTGATTGTGAACGCAATAAGAGATGCAGCTGAAAATTACAATTCAGTTTACGTTTTTTCTTTTGAGAATATGAGGAATAAGAAATTGAAAGAGTTTAGAGATGAGTTGAAAGCAACTAGTAGATTTTTTCTTGGATCTAACAAAGTAATGCAAGTTGCTCTTGGTCGTTCTGCTTCTGATGAAATTAAACCTAATCTTCATAAAGTTTCTAAGTTATTGCGTGGAGATGCTGGGATGGTTTTTACTAATATGTCTAAAGAAGAATTTCAAAGGCTGTTTAATGAATTTGAGGAATTTGATTTTGCAAGAACAGGAGGAATTGCCACGAAAAAGGTGGAACTCAAGGAAGGTCCTTTAGACATTTTCACACATGAAATGGAACCTTTTCTGCGAAAGCAAGGCATGCCTGTTCGGTTAAATAAAGTAGTTGTGGAGCTTGTTTCTGACTTTGTTGTTTGTGAAGAGGGAAAGCCTTTGTCACCTGAAGCAGCTCGCATACTGCGTTTGATGGGAGTCAAGATGGCTACGTTTAAACTGAACCTTGTCTGCAGGTGGAGTGCTGATGATTTTGAACTCTACATTGACGGACCTGGTGATTCAGATGTTGAATGCTCATAG 690 0.3812 MPKSKRNKQVTLSKTTKKGRGHKEVIVNAIRDAAENYNSVYVFSFENMRNKKLKEFRDELKATSRFFLGSNKVMQVALGRSASDEIKPNLHKVSKLLRGDAGMVFTNMSKEEFQRLFNEFEEFDFARTGGIATKKVELKEGPLDIFTHEMEPFLRKQGMPVRLNKVVVELVSDFVVCEEGKPLSPEAARILRLMGVKMATFKLNLVCRWSADDFELYIDGPGDSDVECS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10858 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Vifa1g10858 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 220 - -
Vifa1g10858 229 Gene3D - 125 198 IPR043164 -
Vifa1g10858 229 Pfam Ribosomal protein L10 20 120 IPR001790 -
Vifa1g10858 229 SUPERFAMILY Ribosomal protein L10-like 20 147 IPR043141 -
Vifa1g10858 229 CDD Ribosomal_P0_like 22 184 IPR033867 GO:0000027
Vifa1g10858 229 FunFam Ribosome assembly factor mrt4 125 198 - -
Vifa1g10858 229 FunFam Ribosome assembly factor mrt4 29 128 - -
Vifa1g10858 229 Gene3D - 30 212 IPR043141 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10858 35 217 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 20.219 5.44e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10858 K14815 - gmx:100500064 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10858 1 1827742772 1827744183 Vifa1g10858 1 1827742772 1827744183 ECH