Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10840 ATGTCATTCCGCAGCATAGTTCGTGATGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGTCATCATCATAGAGGGAAATCTCATGGTTCGGTACAGGATTTGCATGATCAGCCTCTTGTAATTCAAAATAGTTGCTGGGCGAGCTTACCCCCAGAATTACTATTTGACGTCATTCGACGGCTAGAGGAGAGTGAGAATACGTGGCCTTCGCGGAAGCATGTAGTTGCTTGTGCTTCTGTTTGTCAGTCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCTGAGTTCTGCGGCAAACTTACATTCCCCGTGTCCCTGAAGCAGCCCGGGCCACGGGACGGAATCATTCAATGCTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTGAGCCCTGCTTTGTTAGTCGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACAAGGAGAACAACCTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAATACATACATTGGAAAGCTGAGATCAAACTTTCTTGGAACAAAATTCATTATATATGATACGCAGCCTCCCCACACTTCTGCCCATATATGTCCTCCGGGAATTGGGAAGACGAGCCGGAGATTTTCTAAAAAGGTATCTCCTAAGGTCCCATCCGGGAGTTACAACATAGCTCAGGTAACATATGAACTGAATGTTCTCGGGACTCGTGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCTGGCGGATCTGTTCCCGGACAGCCAGAGCTCATTCCCCGTTCCCTGGAGGACTCATTCCGTAGCATCTCATTTTCAAAGTCCCTAGACCATTCCATTGAGTTCAGCAGTTCACGGTTTTCCGAGATTGGAGGATCATGCAACGAGGATGGTGACGGCAAGACGAGACCGTTGATTCTGAAAAACAAGCCTCCAAGATGGCACGAACAGTTACAGTGCTGGTGCCTGAATTTCCGGGGACGAGTAACTGTCGCGTCTGTTAAAAACTTTCAGCTGATTGCTTCTACTCAACCACCTGCTGGCGCGCCGACACCATCTCAACCAGCTCCACCGGAACATGATAAGATTATTCTACAATTTGGCAAAGTCGGGAAAGATATGTTCACCATGGATTATCGATATCCGTTATCTGCATTCCAAGCTTTTGCAATATGCCTGAGCAGCTTTGACACCAAGCTGGCTTGTGAATAA 1284 0.4564 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWASLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPHTSAHICPPGIGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIPRSLEDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNEDGDGKTRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10840 427 CDD F-box_AtTLP-like 54 98 - -
Vifa1g10840 427 FunFam Tubby-like F-box protein 49 102 - -
Vifa1g10840 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Vifa1g10840 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Vifa1g10840 427 PANTHER TUBBY-RELATED 27 425 - -
Vifa1g10840 427 Gene3D - 49 101 - -
Vifa1g10840 427 FunFam Tubby-like F-box protein 111 427 - -
Vifa1g10840 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Vifa1g10840 427 Pfam F-box domain 54 101 IPR001810 GO:0005515
Vifa1g10840 427 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Vifa1g10840 427 Pfam Tub family 115 422 IPR000007 -
Vifa1g10840 427 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Vifa1g10840 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10840 Vifa-Chr1 1824220684 1824223449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10840 1 427 TUB Transcription Factor Family AT1G76900 70.217 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa1g10840 Tub 8e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10840 K19600 - gmx:100814578 810.831