Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10839 ATGAAACCAATATGGAATGGACTACAAGGTTTGAAACCAGTGATCCTTATGGTTTTGGTTCAACTTGCATATGCTGCAGTTAATGTGCTTTACAAACTTGCTATCGATGATGGAATGACTGTTAAAGTTGCTACTGCTTATCGTTTAGCTTTTGGTTCAGCTTTCACTGTTCCTCTTGCTCTCATTTCTGAAAGAAACAAGAGGCCAAAGCTGAGTTGGAGAGTACTTTTCATGGCATTTCTTTGCGGCTTGTTTGGGGGAAGTTTATTTCAAAATCTTTTCTATGAGGCTTTGGCTCTAACATCAGCAACATTTGTATCTGCTATCTATAATCTCATTCCTGCCATCACCTTTATCATGGCCATTTCTTGCGGTTTTGAAAGATTGAATTTAAGAGCAGCAGCTGGAAAAGCCAAAGTGTTGGGAACTTTGGCTGGAATTGGTGGAGCAATGATGTTGATTTTTCTCAAAGGTGTAGAAATTAATATTTGGCCATTTCACATCAACGTTATGCATCACCATCAACATCAAACTAGCCATGTTGATTATGGTAGTAAAGGGTTGGGTGTTCTATGTGCAGTAGCAAGTTGTTTTTCTTTTGCTCTATGGTTCATAATTCAGGCTAAGATGAGCAAAGAATATCCAAGTCATTACTCAAGTACAGCTTTAATGTCTACAATGGGAGCAATACAAGCCACTGGTTTTGCTCTTTGTTTTGAAAGAGATCGGAGCCAATGGAAGTTGGGTTGGAACATAAGACTTCTAGCCGTCGCTTATTCGGGAATTGTTGCGTCTGGATTAGTGGTTATTGTGACATCTTGGTGCATAAAGATGAGAGGCCCACTATTTGCATCAGTTTTCAACCCTTTAATGCTCTTGTTTGTGACTATTGTTGCTTCTTTGATGTTGGAAGAAAAATTATACTTAGGAAGTTTGATTGGAGCAGTGTTGATTGTGTGTGGATTATATATGGTTCTTTGGGGTAAGAGTAAAGAGATTAAAAAGATTAATGCCCAATTGGCTACATCAAAAATTGCACAAGAAGCTGAAGAAGATATTCAAGTTGTTGTAATGTCTACACCAATAGTACAAGATCATGATAAATTACATGTTTCCAACAACAATCACATTCAAGTTGATAAAGATCATGATTCAAAAAATGGAGAAATTAAGAGTATTGGAGATGATCCAAAGTAA 1197 0.3726 MKPIWNGLQGLKPVILMVLVQLAYAAVNVLYKLAIDDGMTVKVATAYRLAFGSAFTVPLALISERNKRPKLSWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFVSAIYNLIPAITFIMAISCGFERLNLRAAAGKAKVLGTLAGIGGAMMLIFLKGVEINIWPFHINVMHHHQHQTSHVDYGSKGLGVLCAVASCFSFALWFIIQAKMSKEYPSHYSSTALMSTMGAIQATGFALCFERDRSQWKLGWNIRLLAVAYSGIVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASLMLEEKLYLGSLIGAVLIVCGLYMVLWGKSKEIKKINAQLATSKIAQEAEEDIQVVVMSTPIVQDHDKLHVSNNNHIQVDKDHDSKNGEIKSIGDDPK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10839 398 PANTHER WAT1-RELATED PROTEIN 12 339 IPR030184 GO:0016020|GO:0022857
Vifa1g10839 398 MobiDBLite consensus disorder prediction 378 398 - -
Vifa1g10839 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 331 - -
Vifa1g10839 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
Vifa1g10839 398 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020
Vifa1g10839 398 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10839 Vifa-Chr1 1823487681 1823489994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10839 11 350 Nodulin-like Gene Family AT1G25270 41.691 2.26e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10839 - - gmx:100809587 574.704