Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10838 ATGAAACCAATATGGAATGGACTACAAGGTTTGAAACCAGTGATCCTTATGGTTTTGGTTCAACTTGCATATGCTGCAGTTAATGTGCTTTACAAACTTGCTATCGATGATGGAATGACTGTTAAAGTTGCTACTGCTTATCGTTTAGCTTTTGGTTCAGCTTTCACTGTTCCTCTTGCTCTCATTTCTGAAAGAAACAAGAGGCCAAAGCTGAGTTGGAGAGTACTTTTCATGGCATTTCTTTGCGGCTTGTTTGGGGGAAGTTTATTTCAAAATCTTTTCTATGAGGCTTTGGCTCTAACATCAGCAACATTTGTATCTGCTATCTATAATCTCATTCCTGCCATCACCTTTATCATGGCCATTTCTTGCGGTTTTGAAAGATTGAATTTAAGAGCAGCAGCTGGAAAAGCCAAAGTGTTGGGAACTTTGGCTGGAATTGGTGGAGCAATGATGTTGATTTTTCTCAAAGTAGCAAGTTGTTTTTCTTTTGCTCTATGGTTCATAATTCAGGCTAAGATGAGCAAAGAATATCCAAGTCATTACTCAAGTACAGCTTTAATGTCTACAATGGGAGCAATACAAGCCACTGGTTTTGCTCTTTGTTTTGAAAGAGATCGGAGCCAATGGAAGTTGGGTTGGAACATAAGACTTCTAGCCGTCGCTTATTCGGGAATTGTTGCGTCTGGATTAGTGGTTATTGTGACATCTTGGTGCATAAAGATGAGAGGCCCACTATTTGCATCAGTTTTCAACCCTTTAATGCTCTTGTTTGTGACTATTGTTGCTTCTTTGATGTTGGAAGAAAAATTATACTTAGGAAGTTTGATTGGAGCAGTGTTGATTGTGTGTGGATTATATATGGTTCTTTGGGGTAAGAGTAAAGAGATTAAAAAGATTAATGCCCAATTGGCTACATCAAAAATTGCACAAGAAGCTGAAGAAGATATTCAAGTTGTTGTAATGTCTACACCAATAGTACAAGATCATGATAAATTACATGTTTCCAACAACAATCACATTCAAGTTGATAAAGATCATGATTCAAAAAATGGAGAAATTAAGAGTATTGGAGATGATCCAAAGTAA 1089 0.3719 MKPIWNGLQGLKPVILMVLVQLAYAAVNVLYKLAIDDGMTVKVATAYRLAFGSAFTVPLALISERNKRPKLSWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFVSAIYNLIPAITFIMAISCGFERLNLRAAAGKAKVLGTLAGIGGAMMLIFLKVASCFSFALWFIIQAKMSKEYPSHYSSTALMSTMGAIQATGFALCFERDRSQWKLGWNIRLLAVAYSGIVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASLMLEEKLYLGSLIGAVLIVCGLYMVLWGKSKEIKKINAQLATSKIAQEAEEDIQVVVMSTPIVQDHDKLHVSNNNHIQVDKDHDSKNGEIKSIGDDPK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10838 362 PANTHER WAT1-RELATED PROTEIN 12 302 IPR030184 GO:0016020|GO:0022857
Vifa1g10838 362 MobiDBLite consensus disorder prediction 342 362 - -
Vifa1g10838 362 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020
Vifa1g10838 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
Vifa1g10838 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 210 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10838 Vifa-Chr1 1823487681 1823489994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10838 11 314 Nodulin-like Gene Family AT1G25270 38.776 1.98e-79 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10838 - - gmx:100809587 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10838 1 1823487681 1823489994 Vifa1g10838 1 1823487681 1823489994 ECH
Vifa1g10836 1 1822548790 1822551522 Vifa1g10838 1 1823487681 1823489994 PCT
Vifa1g10838 1 1823487681 1823489994 Vifa1g10837 1 1823154368 1823156352 PCT