Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10836 ATGATGAAAGACAATATATGTAATGTATTGCATGGTTTGAAACCAACGTTGTTAATGCTTATGGTTCAAATAGCATTTGCTGGTGTTAATATTCTCTATAAACTTGCTGTTAACGATGGCATGAACCTAAGAATCGTTGTTGCGTACCGTTTTATATTCTCAACTGCTTTCATAGCTCCAGTTGCTTTCATCATTGAAAGGAAGAAGAGGACAAAGATAACATGGAAGATACTGTTTCAATCATTTCTGTGTGGTTTATTTGGAGGTTCATTAGCTCAAAACTTCTACTTAGAAGCTTTGTCTTTAACTTCACCAACATTTGCATCAGCAATGGCCAACCTTATACCAGCTATAACCTTTATCATGGCCGTTTCCTTTGGTTTGGAAAAACTAAATTTGAGAACAAAAGCTGGAAAGGCAAAGATAATAGGTACAATGACAGGAATTAGTGGAGCAATGGTATTAACTTTTGTTAAAGGTATTGAACTAAATATTGGTTCATTCAATTTAAACCTTTTGCATCACCAAAAGTCACCACCACAAGCTACAATCTCCACTAAGAATACTATTTTGGGTTCTCTATGTGCTTTGGCTAGTAGCAGTTCTTATGCATTATGGCTCATTATTCATGCAAAAATGAGTGAACAATATCCAACTCATTATTCAAGCACAGCTTTGATGTCATTTTGGGCTTCATTGGTTTCCATTGTGTTTGCTCTTTGTTTTGAGAGGGAATTTAGCCAGTGGAAATTGGGTTGGAATATTAGGTTACTAACTGTTGCTTATGCGGGTATAGTGGTTTCAGGAGCAATGATTTGTGTAATTTCATGGTGTGTACACATGAGAGGACCATTGTTTGTATCTGTTTTTAGTCCTTTGATGCTTATTTGTGTGGCCTTGGCTAGTTGTACTATGTTGAATGAAAAACTTCACCTTGGAAGCGTTATTGGAGCAGTGTTGATTGTATGTGGGTTATATGCTGTTGTATGGGGTAAAAGTAAAGAGATGAAGAAAAAGAATCAATTAGCACCATCACAAAGCACACATGAACTTGATACAATTGTAGTAGAAGATAAAAGCAACCATAGAAACAACAATGGTCACAATAATAATTTACATGTTATTAATGATAATGAAGATTCACAAAAAGATGAACATGTACAAAATCAAGAAAAAGAAGGAGGGGGTGTAGAAGAAATTTCACGTAATGCCTAG 1215 0.3531 MMKDNICNVLHGLKPTLLMLMVQIAFAGVNILYKLAVNDGMNLRIVVAYRFIFSTAFIAPVAFIIERKKRTKITWKILFQSFLCGLFGGSLAQNFYLEALSLTSPTFASAMANLIPAITFIMAVSFGLEKLNLRTKAGKAKIIGTMTGISGAMVLTFVKGIELNIGSFNLNLLHHQKSPPQATISTKNTILGSLCALASSSSYALWLIIHAKMSEQYPTHYSSTALMSFWASLVSIVFALCFEREFSQWKLGWNIRLLTVAYAGIVVSGAMICVISWCVHMRGPLFVSVFSPLMLICVALASCTMLNEKLHLGSVIGAVLIVCGLYAVVWGKSKEMKKKNQLAPSQSTHELDTIVVEDKSNHRNNNGHNNNLHVINDNEDSQKDEHVQNQEKEGGGVEEISRNA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10836 404 MobiDBLite consensus disorder prediction 360 404 - -
Vifa1g10836 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 144 - -
Vifa1g10836 404 MobiDBLite consensus disorder prediction 377 404 - -
Vifa1g10836 404 PANTHER WAT1-RELATED PROTEIN 15 343 IPR030184 GO:0016020|GO:0022857
Vifa1g10836 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 334 - -
Vifa1g10836 404 Pfam EamA-like transporter family 15 155 IPR000620 GO:0016020
Vifa1g10836 404 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10836 Vifa-Chr1 1822548790 1822551522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10836 13 352 Nodulin-like Gene Family AT1G25270 42.151 1.56e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10836 - - tpra:123910665 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10836 1 1822548790 1822551522 Vifa1g10836 1 1822548790 1822551522 ECH
Vifa1g10836 1 1822548790 1822551522 Vifa1g10838 1 1823487681 1823489994 PCT
Vifa1g10837 1 1823154368 1823156352 Vifa1g10836 1 1822548790 1822551522 PCT