Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10830 ATGGTTGGAAGTGTTGATGTTTTGGTTGATGATTTAAGCATTAACAGACCAGTTGATGTATTGCCTGAGGATTTTGATGTATCCGCCATTATCAAAGATCCTGTGCCTCCTGTAGTTGAAGACATTAATGACAAGGTGGAGGCTCAGTTTGCTGCAGGAAATGAGAAAAGACAAATAGTTCTGGGAAGAAATATTCATACCTCGTGTCTTGAAGTTACGGAGCCAGAAGATGATGATGACATTACTGGGGATCGTGATGCTCATATGGCAAGTGTGTTGGCAAGATACAGAAAATCTTTAACTGAAAGGACAAAGTATCATTTAGGCTACCCCTATAATTTGGATTTCGATTACGGTGCACTCTCTCAACTTCAGCACTTTTCCATAAACAACCTTGGAGATCCATTTATTGAAAGCAATTACGGTGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCAGATTGTGGGAACTGGAGAAAAATGAGTATTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTTCATGGCATCCTAGTTGGGAGAGAGGTGTTACCAGATGGGATTTTGTATGCCTCGCGGGAGTCACATTATTCAATTTTTAAAGCTGCTCGTATGTACCGAATGGAATGTGTGAAGATTGACACTCTTAATTCAGGCGAGATTGATTGTGATGATTTCAAGGCCAAACTTCTTTGTCACCAGGACAAGCCAGCAATTATAAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATCTGGTTATACAGAAACTTGAAGAAGCTGGATTTTCACATGACAGGTTCTACATCCACGTTGATGGGGCATTGTTTGGTCTCATGATGCCTTTTGTGAAACGAGCTCCAAAAGTAACTTTTAAGAAGCCTATTGGAAGTGTGAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCCATGCCTTGTGGGGTGCAGATAACAAGATTGGAGCATATCAATGCTCTTTCCAGGAATGTGGAATACCTTGCATCTAGGGATGCCACAATCATGGGTAGTCGAAATGGCCATGCTCCCATATTCCTTTGGTATACCTTGAACCGGAAAGGATACAAAGGCTTCCAGAAAGAAGTACAGAAATGCTTGCGAAATGCATTCTACTTCAAAGACCGCCTTATCGATGCTGGGATTGGTGCAATGCTTAATGAGCTTAGCAGCACGGTTGTATTTGAGCGGCCTCATGATGAGGAATTTATCCGCAAATGGCAGTTAGCATGCAAGGGGAACATCGCTCATGTGGTGGTGATGCCAAATGTCACTATTCAGAAACTTGATGAATTTCTAAACGAGCTTTTGCAGAAGCGTGTTGCTTGGTTTGAAGAGGGGAAGTATCAGCCGTATTGTATAGCATCAGATGTAGGTGAAAACAGTTGCCTATGTGCTCTGCATAAGTAA 1455 0.4247 MVGSVDVLVDDLSINRPVDVLPEDFDVSAIIKDPVPPVVEDINDKVEAQFAAGNEKRQIVLGRNIHTSCLEVTEPEDDDDITGDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSIFKAARMYRMECVKIDTLNSGEIDCDDFKAKLLCHQDKPAIINVNIGTTVKGAVDDLDLVIQKLEEAGFSHDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAFYFKDRLIDAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIQKLDEFLNELLQKRVAWFEEGKYQPYCIASDVGENSCLCALHK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10830 484 Pfam Pyridoxal-dependent decarboxylase conserved domain 194 397 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vifa1g10830 484 SUPERFAMILY PLP-dependent transferases 103 452 IPR015424 -
Vifa1g10830 484 PANTHER - 52 484 - -
Vifa1g10830 484 Gene3D Aspartate Aminotransferase, domain 1 367 455 IPR015422 GO:0003824
Vifa1g10830 484 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 308 329 IPR021115 GO:0016831
Vifa1g10830 484 Gene3D - 122 366 IPR015421 GO:0003824
Vifa1g10830 484 FunFam Serine decarboxylase 1 123 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10830 Vifa-Chr1 1820523486 1820527163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10830 207 390 Calmodulin-binding Proteins AT1G65960 26.425 4.24e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10830 K25193 - gmx:100795577 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10830 1 1820523486 1820527163 Vifa1g10830 1 1820523486 1820527163 PCT