Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10819 ATGTCTGATTCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCGTGGTCAACCTCGGATAGAAAGTTAAAGGAAGCATTTGAAAAGTATGGCAAGCTTCTTGAGGCTAAGGTTGTGGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTAACCTTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCCATGAATGGAATTGACTTGGATGGTCGAACTATTACTGTAGATAAAGCCCAACCTCAAGGAAATAGAGACGATGATGATCGTCGAGGTGGTCGTGACTCACGTGATCGCAATCGTGGCCGAGATTATGGAGGTGGTCGAGGGTCTAATGGTGGTGAATGCTTCAAGTGTGGTAAACCTGGTCATTTTGCAAGAGAATGTCCCAGTGAAGGAGGAGAAAGAGGGGGAAGGTATGGTGGCAGAGAAAGTAGATATAGCGGCGGCTATGGTCCTGAAAGAAATGGTGGTGGTCGCGATCGGGATGGTGGCGGTCGTGATAGGGATGGTGGTGGGCGCGATAGGGATGGTGGCGGACGTGAAAGGGATGGTGGAGGTCGTGATAGGGATGGTGGTGGGCGTGATAGGGATGGTGGCGGTCGTGACAGGGATCGTGCTGGACCATATGAGCGTCGTGGATCATCTGGAAGTTACCGTTGA 675 0.5067 MSDSDEFRCFIGGLAWSTSDRKLKEAFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGNRDDDDRRGGRDSRDRNRGRDYGGGRGSNGGECFKCGKPGHFARECPSEGGERGGRYGGRESRYSGGYGPERNGGGRDRDGGGRDRDGGGRDRDGGGRERDGGGRDRDGGGRDRDGGGRDRDRAGPYERRGSSGSYR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10819 224 SUPERFAMILY Retrovirus zinc finger-like domains 112 137 IPR036875 GO:0003676|GO:0008270
Vifa1g10819 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vifa1g10819 224 CDD RRM2_NsCP33_like 8 83 - -
Vifa1g10819 224 ProSiteProfiles Zinc finger CCHC-type profile. 120 135 IPR001878 GO:0003676|GO:0008270
Vifa1g10819 224 Pfam Zinc knuckle 119 135 IPR001878 GO:0003676|GO:0008270
Vifa1g10819 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Vifa1g10819 224 MobiDBLite consensus disorder prediction 76 224 - -
Vifa1g10819 224 Gene3D - 2 115 IPR012677 -
Vifa1g10819 224 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vifa1g10819 224 MobiDBLite consensus disorder prediction 160 215 - -
Vifa1g10819 224 MobiDBLite consensus disorder prediction 132 146 - -
Vifa1g10819 224 SUPERFAMILY RNA-binding domain, RBD 3 117 IPR035979 GO:0003676
Vifa1g10819 224 Gene3D - 116 171 - -
Vifa1g10819 224 MobiDBLite consensus disorder prediction 85 109 - -
Vifa1g10819 224 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Vifa1g10819 224 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10819 Vifa-Chr1 1819672135 1819672986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10819 9 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.230 3.27e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10819 - - tpra:123908224 254.603