Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10818 ATGTGTCCCTTAGTTTTTGTGTCTCTCCTATTCTTATTCTTAATTGATGGTTCTAAGGGTCAGCTTCGAATTAGTTTCTACTCAGACACATGTTTTGCCGCAGAATCCATTGTCCGTGATGTTGTTAGAGAAGCTGCTCTTTCTGACCCAACTGTGCCTGCTGCTTTGCTTAGGCTTCAGTTTCATGACTGTTTTGTTGAGGGATGTGATGGTTCCATTCTGATAGGTAATGTTACAGAACCAGAAAGAGATGCATTTGCACATCAAGGTCTTAGAGGGTTTGATGTGATAGAAAAAGCTAAGGCGGAATTGGAAGAATCTTGTCCAGGAGTGGTTTCTTGTGCAGATATTGTTGCATTGGCAGCAAGAGATGCAATTTTCATGGCAAATGGACCTTGGTACAAAGTTCCAACAGGGAGGAGAGACGGATTTGTTTCTAAAAAATCTCTTGCAGATGATATGCCAGATGTTAGTGATTCAATTCAGCAACTCAAAACCAAGTTCATGAACAAGGGTCTCACAGATAAAGACCTTGTCCTTCTCAGTGCTGCACATACAATAGGAACAACTGCATGTTTCTTCATGACAAAAAGACTATACAACTTTTTTCCATCTGGTGGTGGATCAGACCCTGCTATAAATCCAAATTTCCTCCCAGAACTTAAGGCAAAGTGCCCTCCAAAGGGACACGAGAACGATCGTTTAGCCATGGACATAATGACAGAAAGAAAATTCGACAAGAACATATTGAGAAACATAAGGGAAGGTTTTGCTGTGTTAGAATCCGATGCAAGACTTAATGATGATGCAAGAACAAAGGCTGTGGTGGAATCATACTTAGGTCCCTTAACTCCAATATTAGGACCTTCTTTCGAAAATGATTTTGTTGAGTCAATTGTTAAAATGGGACAAATTGGTGTCAAGACAGGTTCTGATGGAAACATTAGGCGTGTCTGCTCACAGCTCCATTGA 972 0.4074 MCPLVFVSLLFLFLIDGSKGQLRISFYSDTCFAAESIVRDVVREAALSDPTVPAALLRLQFHDCFVEGCDGSILIGNVTEPERDAFAHQGLRGFDVIEKAKAELEESCPGVVSCADIVALAARDAIFMANGPWYKVPTGRRDGFVSKKSLADDMPDVSDSIQQLKTKFMNKGLTDKDLVLLSAAHTIGTTACFFMTKRLYNFFPSGGGSDPAINPNFLPELKAKCPPKGHENDRLAMDIMTERKFDKNILRNIREGFAVLESDARLNDDARTKAVVESYLGPLTPILGPSFENDFVESIVKMGQIGVKTGSDGNIRRVCSQLH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10818 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Vifa1g10818 323 Pfam Peroxidase 38 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 FunFam Peroxidase 25 172 - -
Vifa1g10818 323 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Haem peroxidase superfamily signature 130 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Haem peroxidase superfamily signature 112 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 ProSiteProfiles Plant heme peroxidase family profile. 21 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 FunFam Peroxidase 155 302 - -
Vifa1g10818 323 SUPERFAMILY Heme-dependent peroxidases 21 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 CDD secretory_peroxidase 21 320 IPR033905 GO:0004601|GO:0042744
Vifa1g10818 323 Gene3D Peroxidase, domain 2 155 302 - -
Vifa1g10818 323 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 130 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 111 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g10818 323 Gene3D - 25 320 - -
Vifa1g10818 323 PANTHER PEROXIDASE 25-RELATED 10 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10818 Vifa-Chr1 1819316789 1819318187 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10818 4 320 Peroxidase AT1G77100 53.894 9.66e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10818 K00430 - gmx:547549 457.218