Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10812 ATGGTGAAAGGACGTCAAGGCGAGCGTGTTAGGCTTTATGTGAGGGGCACAATTCTTGGATACAAGAGATCCAAATCAAACCAGTACACAAACACATCTCTGGTCCAAATCGAAGGAGTTAACACCAAGGAGGAGGTAGCTTGGTATGCCGGCAAGCGATTGGCATATATCTACAAGGCCAAGGTGAAGAAGAATGGAACCCATTATCGCTGCCTATGGGGAAAGGTTACAAGGCCACACGGAAACAGTGGTATTGTTCGTGCCAAATTCACATCAAATCTTCCTCCCAAATCAATGGGATCAAGGATAAGAGTATTTATGTATCCCAGGTTTTCAACTCACCACCGATTCACGCTCCTTCATCATCTGCTTATCCAATCCACAGCTTTTCTGCCTCCAAGACCACCAAATAGAACTGTAACACCTCCACACTTCTATATCCGCACTACCGGCTACTCCACAACCACCAACCAGACAGTTTCTCGTCAACCAACAATCGCGCACCTCTCAACAACTGCACCGCACCCAACTCACCAATCTGACCATCAATTCATCTGCACCAAGCCTCCGCTACCCGACACCGCCAGATCCACGACACCATCCTCTGACCATACGCTTTGCCACGCTGCAATGGCTCTTCCCCCTCTATCTATTAGGGGAGATTTTGGTGTTCTTTATACTGCTGCTGCTAGATATGCTCCTTCTCTTTTCAATACCTTTTTACAAATGGGTCCTCAGGCTGCTCTTCGATCCATGCAGCTTCTCTCGCCTTTCTCCCAAATACTTGATTCTTTGGAACTCAAACACCCTTTTATAAGAAATTGGATTGACCTACTCTCTTTCTTACTTGCTGGTGTCAAATCTGATAGTATACTTTCTGCAGAGATGGTTTACATGTTTGCAGAATGGTACAAACCAGGGGGCTGTCTTGAGTACCCCCTAGATGGATCCGCATGTATTATTGATACTCTTGTACGAGGACTAGACAAGTTTGGTGGAAGGATTTCTCTTCAAAGTCATGTGGAAAAGATTGTTGTTGAAAATGACAGAGCCGTTGGAGTGAAGCTGACAAGTGGTCAATTCATACGTGCTAAGAAGGCTGTTGTGAGCAATGCATCAATGTGGGATACTTTAAAATTGCTACCTGAAGAAATTGTTCAAAAGTCTGAATCAGATAGGATTAATACCACTCGCCAATGTGAATCGTTCATGCATCTCCATTTGGGATTTGATGCAGAGGGCATACGAGATGACCTGGGAATTCATCATATAGTTGTAAATGATTGGGAAAGAGGAGTTGACGCAGATCAGAACGTTGTGCTGATATCAGTGCCTAGTGTGCTTACTCCTAATCTGGCGCCTAGTGGAAAACATGTGTTACATGCTTATCTTCCAGTAACTGAACCATTTGAGTTGTGGGAAGGACTTGATCGTAGGAGTGCTGAATACAGAAATCTTAAAGCTCAAAGATCAGAGGTGTGCTGGTCATTCGATTCACATAGCTGGTCTTATGAGATTGGATGTAGAAGAGACGTCCCTCGATACTATCTATGTTACGGTGTGTGGGCGTCTCCTTATCTTCCTCTGCATATGGGTAAAGTAGAAAATGCAACTAAAATGTTCCATGAACATTTTGGACACCAGTTACAGCCACCAATTGGAGAAAAACGAGTCGAAGAATTGGGGAATTGGGTTAGAAGGGAATTTCATGTTGGTGGAAACAGTTGGGACTCGAGTTCTGTAGACATTGCTGCTGCTGGCCTTGGTTGGTTTGCCATTGGACTTAAAGGAGAAGCCGTATCAAATACTTTTGAAGTCACAGGATTTACCGTATCGAAGATTGTCTCACAGTCTGACCGAGCTTCAAATAAGCCACGTCAACAAAATGACAAGAAGACAAAGCGGATTGAATCAAAACCGCTATCCAGTTCGATTCTTTACATTAACAAAGACCTTGCTTTGCAAACAACTATGAAAGGGCTTGTGGTGGCCATGTCGCTAATTGGAGCTACTGTCATTACGACTTGCTCTGGTCCCATCTCAGATTGGCTTGGTCGGAGACCAATGTTGATAATCTCATCCGTGCTGTATTTCTTGGGTAGTTTGGTGATGTTATGGTCTCCTAATGTTTATGTGTTGTTCTTAGCAAGGCTGCTTGATGGATTTGGTATTGGCCTTGCCGTAACTCTTGTTCCGGGTTTATATATCGGAGACTGCTCCCTCCGATATAAGGGGGTCGTTGAATACACTTCCCCAGTTTAG 2262 0.4425 MVKGRQGERVRLYVRGTILGYKRSKSNQYTNTSLVQIEGVNTKEEVAWYAGKRLAYIYKAKVKKNGTHYRCLWGKVTRPHGNSGIVRAKFTSNLPPKSMGSRIRVFMYPRFSTHHRFTLLHHLLIQSTAFLPPRPPNRTVTPPHFYIRTTGYSTTTNQTVSRQPTIAHLSTTAPHPTHQSDHQFICTKPPLPDTARSTTPSSDHTLCHAAMALPPLSIRGDFGVLYTAAARYAPSLFNTFLQMGPQAALRSMQLLSPFSQILDSLELKHPFIRNWIDLLSFLLAGVKSDSILSAEMVYMFAEWYKPGGCLEYPLDGSACIIDTLVRGLDKFGGRISLQSHVEKIVVENDRAVGVKLTSGQFIRAKKAVVSNASMWDTLKLLPEEIVQKSESDRINTTRQCESFMHLHLGFDAEGIRDDLGIHHIVVNDWERGVDADQNVVLISVPSVLTPNLAPSGKHVLHAYLPVTEPFELWEGLDRRSAEYRNLKAQRSEVCWSFDSHSWSYEIGCRRDVPRYYLCYGVWASPYLPLHMGKVENATKMFHEHFGHQLQPPIGEKRVEELGNWVRREFHVGGNSWDSSSVDIAAAGLGWFAIGLKGEAVSNTFEVTGFTVSKIVSQSDRASNKPRQQNDKKTKRIESKPLSSSILYINKDLALQTTMKGLVVAMSLIGATVITTCSGPISDWLGRRPMLIISSVLYFLGSLVMLWSPNVYVLFLARLLDGFGIGLAVTLVPGLYIGDCSLRYKGVVEYTSPV 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10812 753 PANTHER - 205 496 IPR045892 GO:0016116
Vifa1g10812 753 SUPERFAMILY FAD/NAD(P)-binding domain 221 463 IPR036188 -
Vifa1g10812 753 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa1g10812 753 Gene3D translation elongation factor selb, chain A, domain 4 7 111 IPR038661 -
Vifa1g10812 753 FunFam 60S ribosomal protein L35a 7 112 - -
Vifa1g10812 753 Pfam Ribosomal protein L35Ae 12 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa1g10812 753 SUPERFAMILY MFS general substrate transporter 643 733 IPR036259 -
Vifa1g10812 753 SUPERFAMILY Translation proteins 12 106 IPR009000 -
Vifa1g10812 753 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vifa1g10812 753 ProSitePatterns Sugar transport proteins signature 1. 677 694 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa1g10812 753 ProSiteProfiles Major facilitator superfamily (MFS) profile. 582 753 IPR020846 GO:0022857
Vifa1g10812 753 Gene3D - 288 413 IPR036188 -
Vifa1g10812 753 Pfam Sugar (and other) transporter 610 735 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa1g10812 753 Gene3D MFS general substrate transporter like domains 638 745 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10812 Vifa-Chr1 1818885197 1818889556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10812 1 109 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 90.826 1.58e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10812 - - gmx:100810986 499.204