Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10804 ATGGAACGAGTGACTTTTGTTTTTTGGGCAATTTTGGTTTTTGATTTTGTGCTTAAAGGTTCTTCTAATGTGGAAGGTGATGCACTTAATGCATTGAAGAGCAACTTGAATGATCCTAACAATGTTCTTCAAAGTTGGGATGCTACCCTTGTGAATCCTTGCACGTGGTTTCATGTTACATGCAATGGCGATAATAGTGTGACCCGTGTTGATCTTGGTAATGCGGACCTCTCTGGTACACTGGTTTCACAACTTGGCGATCTCTCAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACAGGAAAAGTCCCGGAAGAGCTAGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAAGTGGTACCATACCGAATACATTGGGCAAGCTTCAAAAACTACGTTTCCTGCGTCTCAACAATAACACCTTGACGGGCCACATTCCCGTGTCTCTGATAAATGTTTCTACGCTGCAAGTTCTTGATCTGTCAAACAACAATCTAGAAGGGGATGTCCCAGTCGATGGTTCATTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTCGCTTGAAACAACCGAAAAACACTCCCGCGCCACTTTCTCCACCGTCACCGGCTTCTTCAGCTAGCAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTTTTGTTTGCTGCCCCTGCAATTGCACTTGCTTATTGGCGAAAAAGAAAACCAGAGGATCATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGCGAACTTCTAGTAGCAACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGTTTAGCTGATGGCACCCTTGTAGCAGTAAAAAGACTTAAAGAGGAAAGGACACAGGGTGGTGAGCTACAATTTCAAACAGAAGTTGAAATGATCAGTATGGCTGTGCATCGCAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACTGAACGTTTGCTTGTGTATCCTTATATGGCCAATGGAAGTGTAGCATCATGTTTACGAGAACGTAGTGAATCTGATCCTCCGCTTGAGTGGCCAATGAGGAAGAATATTGCCCTGGGATCTGCCAGGGGGCTTGCTTACTTGCACGATCATTGCGACCCTAAGATTATTCACCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTCGGTTTAGCAAAGCTTATGGATTACAAAGATACACATGTTACTACTGCTGTTCGTGGTACGATTGGACACATAGCACCCGAGTATCTGTCAACAGGAAAGTCTTCAGAAAAGACGGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCACGTCTTGCCAATGATGATGATGTTATGTTGCTTGATTGGGTTAAAGGACTCCTCAAAGACAAGAAGTTGGAAACACTTGTAGATGCAGAATTAACGGGAAATTATGACGATGATGAGGTAGAGCAGTTAATCCAAGTGGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTTGTGAGAATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGAGCAATGGCAGAAAGAAGAGACGTATCGACAAGATTTTAACAACAATCACATGCATCACCCTAATGCAAATTGGATAGTAGTAGATTCAACATCACATATCCAGCCAGATGAACTCTCAGGCCCTAGATGA 1836 0.4227 MERVTFVFWAILVFDFVLKGSSNVEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVSQLGDLSNLQYLELYSNNITGKVPEELGNLTNLVSLDLYLNNLSGTIPNTLGKLQKLRFLRLNNNTLTGHIPVSLINVSTLQVLDLSNNNLEGDVPVDGSFSLFTPISYQNNPRLKQPKNTPAPLSPPSPASSASSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRERSESDPPLEWPMRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELTGNYDDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNHMHHPNANWIVVDSTSHIQPDELSGPR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10804 611 Gene3D Ribonuclease Inhibitor 22 205 IPR032675 -
Vifa1g10804 611 SMART serkin_6 285 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10804 611 FunFam Somatic embryogenesis receptor kinase 1 254 361 - -
Vifa1g10804 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Vifa1g10804 611 ProSiteProfiles Protein kinase domain profile. 285 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10804 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 570 - -
Vifa1g10804 611 FunFam Somatic embryogenesis receptor kinase 1 21 207 - -
Vifa1g10804 611 SUPERFAMILY Protein kinase-like (PK-like) 264 560 IPR011009 -
Vifa1g10804 611 FunFam Somatic embryogenesis receptor-like kinase 1 362 579 - -
Vifa1g10804 611 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Vifa1g10804 611 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Vifa1g10804 611 MobiDBLite consensus disorder prediction 194 219 - -
Vifa1g10804 611 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vifa1g10804 611 Pfam Protein kinase domain 286 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10804 611 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Vifa1g10804 611 SUPERFAMILY L domain-like 25 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10804 Vifa-Chr1 1817747824 1817751803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10804 1 611 Receptor kinase-like Gene Family AT4G33430 76.284 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa1g10804 Pkinase 7.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10804 K13416 - gmx:100800522 1038.48