Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10803 ATGAAGGAAAGAGTGATTTTTCTTTTTTGGGCAGTTTTTGTGCTTCATTTGCTGTTTAAAGCTTCTTCCAATTCAGAAGGTGATGCACTGAATGCATTGAAGAGCAATTTGCAGGATCCTAACAATGTTCTTCAAAGTTGGGATGCTACCATTGTCAATCCCTGCACGTGGTTTCATGTTACATGCAATGTTGATAGCAGTGTGACCCGTGTTGATCTTGGAAATGCGGGGCTTTCTGGTACACTGGTTTCAAGCCTTGGTGATCTCCCAAATTTGCAGTACTTGGAACTTTATAATAATAATATAACAGGTAAAATCCCAGAAGAGCTAGGAAATTTGCTAAGCTTGGAGAGTTTGGATCTTTACGTGAACAATATGAGTGGTGTTATACCTGATAAATTGGGCAAGCTTCAAAAACTGCGTTTTCTGCGTCTCAATAATAACAACTTGACGGGCCATATTCCCATATCTTTGACAAATGTTTCTACGCTGCAAGTTCTTGATCTCTCATACAACAATCTAGAAGGGGATGTTCCTGTGGATGGTTCTTTTTCAATGTTTACCCCTGTCAGTTATAAAAATAATCCTCGCTTGAAAAACATAGCAATCAATCCTGTGCCACTTTCTCCGTCGCCACGAACTTCTTCAGGTATTAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCTGCCCCTGCAATTGCACTTGCTTATTGGCGAAAAAGAAAACCACATGATAATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTCTCTCTACGTGAGCTGCTAGTAGCGACAGATAACTTCAGTAACAAACACATCCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGTTTAGTGGATGGCAAACTTGTAGCAGTAAAAAGACTTAAAGAGGAACGTACACAAGGCGGGGAGCTGCAATTTCAAACAGAAGTTGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTCCGGCTTCTTGGTTTTTGCATGACATCTACTGAACGCTTGCTTGTGTATCCTTTCATGGCCAATGGAAGTGTGGCATCATGTTTACGAGAACGTAATGATTCTGATCCGCCGCTTGAGTGGCAAAAGCGAAAAAATATTGCGCTGGGATCTGCCAGGGGACTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGCGATGTGAAAGCTGCAAATATATTGTTGGATGGGGAATTTGAAGCAGTTGTTGGAGATTTCGGTTTAGCAAAGCTTATGGATTATAAAGATACCCATGTTACTACAGCTGTCCGTGGTACGATTGGGCATATAGCACCTGAGTACCTGTCAACGGGAAAATCTTCAGAAAAGACTGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACTGGACAAAGGGCCTTTGATCTAGCACGACTTGCCAATGATGACGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGCTGGAAACACTTGTAGATGCAGAATTAATGGGAAATTATGATGACGATGAGGTAGAGAAGTTAATCCAAGTGGCTTTACTTTGCACACAAGGGTCCCCAATGGAAAGGCCAAAGATGTCTGATGTGGTGAGAATGGTAGAAGGTGATGGTTTGGCAGAAAAATGGGAGCAATGGCAGAAAGAAGAAACGTATCGACACAATTTTAACAACAACCACATGCTTCACCCTAATGCAAATTGGATGATAGTAGATTCAACTTCACATATCCAGCCAGATGAACTCTCAGGTCCTAGATGA 1839 0.4171 MKERVIFLFWAVFVLHLLFKASSNSEGDALNALKSNLQDPNNVLQSWDATIVNPCTWFHVTCNVDSSVTRVDLGNAGLSGTLVSSLGDLPNLQYLELYNNNITGKIPEELGNLLSLESLDLYVNNMSGVIPDKLGKLQKLRFLRLNNNNLTGHIPISLTNVSTLQVLDLSYNNLEGDVPVDGSFSMFTPVSYKNNPRLKNIAINPVPLSPSPRTSSGISNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPHDNFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKHILGRGGFGKVYKGRLVDGKLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLLGFCMTSTERLLVYPFMANGSVASCLRERNDSDPPLEWQKRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDGEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELMGNYDDDEVEKLIQVALLCTQGSPMERPKMSDVVRMVEGDGLAEKWEQWQKEETYRHNFNNNHMLHPNANWMIVDSTSHIQPDELSGPR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10803 612 SUPERFAMILY L domain-like 23 190 - -
Vifa1g10803 612 ProSiteProfiles Protein kinase domain profile. 286 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10803 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 571 - -
Vifa1g10803 612 FunFam Somatic embryogenesis receptor kinase 1 22 213 - -
Vifa1g10803 612 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vifa1g10803 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Vifa1g10803 612 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Vifa1g10803 612 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10803 612 FunFam Somatic embryogenesis receptor-like kinase 1 363 580 - -
Vifa1g10803 612 Pfam Protein kinase domain 287 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10803 612 Gene3D Ribonuclease Inhibitor 22 204 IPR032675 -
Vifa1g10803 612 SUPERFAMILY Protein kinase-like (PK-like) 265 560 IPR011009 -
Vifa1g10803 612 FunFam Somatic embryogenesis receptor kinase 1 255 362 - -
Vifa1g10803 612 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Vifa1g10803 612 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vifa1g10803 612 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10803 Vifa-Chr1 1817526305 1817530581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10803 1 612 Receptor kinase-like Gene Family AT4G33430 72.205 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa1g10803 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10803 K13416 - gmx:100800522 982.245