Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10800 ATGAGTCAAGTTTTTAGTGATGAAGTTGTGGCAAGAATCACTGAGGAAATAAATAGCAATCCTTCTTCACGTAGACATGCTGAAAACATTCTTCCACATAGGCACAAAGTTGCATCTCCTCCTAGGCAAACACTTTTCCAAGAGTTCAAGCATAGTTTCAATGAAACATTCTTCTCAGATGACCCTTTTGGCAAGTTTAAGAATCAAAAAGGATCAAGAAGGTTTATTCTTGGACTCGAGTCTATTTTCCCGATTTTCGAATGGGGAAGAGGCTACAATTTGAAGAGTTTCAAGGGTGATTTGATTGCTGGACTCACCATTGCAAGTCTTTGCATTCCTCAGGATATTGCATATGCAAAGCTTGCAAATTTGGAACCACAGTATGCACTATATACAAGTTTTGTTGCTCCACTTGTGTATGCTTTCATGGGAAGTTCAAGAGATATTGCTATAGGACCAGTAGCTGTTGTGTCTCTCTTGCTTGGCACTTTGCTAACAGATGAAATCCCTAACTTCAAAAGTCATGAATATCTTCGTCTCGCATTTACTGCGACTTTCTTTGCAGGAATTACTCAAATGGCACTTGGAGTTTTAAGGCTTGGTTTCTTGATTGATTTCCTATCTCATGCTGCCATTGTTGGATTCATGGCCGGAGCGGCCGTTACTATTGCACTCCAACAACTTAAAGGTTTTCTTGGCGTAAAAGATTTCACTAAGAAAACTGATATTATTTCTGTCATGAGATCGGTTTTTAGTGCAGCCCACCACGGGTGGAATTGGGAGACAATACTAATTGGAGCATCATTCTTGGCTTTCCTTCTTACAACAAAATATATTGCTAAGAAGAAAAAGAATCTGTTTTGGGTGGCTGCTATATCTCCTATGATATGTGTTATTGTCTCTACTTTTTGTGTTTACATTACAAGGGCTGACAAAAAGGGAGTAGCAATTGTGAAACATATTAAAAAGGGTGCGAATCCAATATCCGTCAGTGAAATATATTTCAGTGGAAATTATCTTACTGCTGGTATTAGGATTGGTCTGATTTCTGGTATGGTAGCACTCACGGAAGCTGTGGCTATTGGAAGAACATTTGCTGCTATGAAAGACTATTCGTTGGACGGTAACAGAGAAATGGTGGCACTAGGAACAATGAATGTTATTGGTTCATTTACATCTTGTTATGTAGCTACAGGATCGTTTTCGCGTTCGGCTGTGAACTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCATAGTTTTGTTGTTAACTTTGTTGGTGATTACACCGTTATTCAAGTATACTCCAAACGCAGTGCTTGCATCGATCATCATAGCTGCTGTCATGAGCCTTATCGATTTTCCGGCAGTTATTCTTCTTTGGAAGGTTGACAAATTTGATTTTCTAGCTTGCATGGGAGCCTTCTTTGGTGTCATCTTCCAAAGTGTTGAGATTGGTCTTCTAATCGCGGTGGCAATATCTTTTGCCAAAATTCTCTTACAAGTGACAAGGCCAAGGACCGTGGTACTTGGGAAGCTTCCAGGGACAACTGTTTATCGGAACGTCCTGCAATATCCCAAAGCAACTCAGATTCCCGGTATGCTTATCGTCAGGGTTGATTCTGCAATCTACTTCTCAAATTCCAACTACATCAAGGACAGAATATTGAAGTGGCTCACTGATGAAGAGGCTCAAAGGACAGCAAGTGAATTTGCCAGTATACAGTATCTCGTTGTTGAAATGTCGCCTGTCACTGATATTGACACTAGTGGCATTCATGCCTTAGAAGATTTACTCAAGAGCCTCAAGAAAAAAGATGTCCAGGTTCTTCTGACGAATCCGGGACCGATTGTAATTGAGAAGCTCCATGCATCAGAGTTATCACGCTTAATTGGGGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTGCAACTTTTGGTCCAAAGGGTGTAGATTCTTGA 1977 0.4011 MSQVFSDEVVARITEEINSNPSSRRHAENILPHRHKVASPPRQTLFQEFKHSFNETFFSDDPFGKFKNQKGSRRFILGLESIFPIFEWGRGYNLKSFKGDLIAGLTIASLCIPQDIAYAKLANLEPQYALYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLTDEIPNFKSHEYLRLAFTATFFAGITQMALGVLRLGFLIDFLSHAAIVGFMAGAAVTIALQQLKGFLGVKDFTKKTDIISVMRSVFSAAHHGWNWETILIGASFLAFLLTTKYIAKKKKNLFWVAAISPMICVIVSTFCVYITRADKKGVAIVKHIKKGANPISVSEIYFSGNYLTAGIRIGLISGMVALTEAVAIGRTFAAMKDYSLDGNREMVALGTMNVIGSFTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSIVLLLTLLVITPLFKYTPNAVLASIIIAAVMSLIDFPAVILLWKVDKFDFLACMGAFFGVIFQSVEIGLLIAVAISFAKILLQVTRPRTVVLGKLPGTTVYRNVLQYPKATQIPGMLIVRVDSAIYFSNSNYIKDRILKWLTDEEAQRTASEFASIQYLVVEMSPVTDIDTSGIHALEDLLKSLKKKDVQVLLTNPGPIVIEKLHASELSRLIGEDKIFLTVGDAVATFGPKGVDS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10800 658 SUPERFAMILY SpoIIaa-like 530 652 IPR036513 -
Vifa1g10800 658 FunFam Sulfate transporter 31 508 654 - -
Vifa1g10800 658 NCBIfam sulfate permease 84 647 IPR001902 GO:0016020|GO:0055085
Vifa1g10800 658 CDD STAS_SulP_like_sulfate_transporter 529 644 - -
Vifa1g10800 658 Pfam Sulfate permease family 97 476 IPR011547 GO:0016020
Vifa1g10800 658 PANTHER SULFATE TRANSPORTER 43 649 IPR001902 GO:0016020|GO:0055085
Vifa1g10800 658 ProSiteProfiles STAS domain profile. 528 651 IPR002645 -
Vifa1g10800 658 Pfam STAS domain 529 647 IPR002645 -
Vifa1g10800 658 Gene3D STAS domain 508 652 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10800 Vifa-Chr1 1816933976 1816937237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10800 22 658 Inorganic Solute Cotransporters AT1G22150 71.787 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10800 K17470 - gmx:100784124 1042.34