Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10798 ATGAGTCATGTTCTTAGTGATGAAGCTGTGGCAAATGCAATGGAGGAAATAAAAAACAATCTTTCTTCACGTAGACCTGATGATGATAATATTCTTCCACATATTCACAAAGTTTCAACTCCTCCTAAGCAATCACTTTTCCAAGATATCAAACATAATTTCAATGAAACATTCTTCTCAGATGACCCTTTTGGCAAGTTTAAGAATCAAACAGGATCAAGAAGGTTTGTTCTTGGACTCCAAACTGTTTTCCCGATTTTCGAGTGGGGAAGATATTACAATCTTAAAAGTTTCAAGGGGGATTTGATTGCTGGACTCACCATTGCAAGTCTTTGCATTCCTCAGGATATTGCGTATGCAAATCTTGCAAACTTGGAACCACATTATGGACTATATACAAGTTTTGTTGCTCCTCTTGTGTACGCTTTTATGGGAAGTTCAAGAGATATTGCTATCGGACCAGTAGCTGTTGTGTCTCTCTTGCTTGGCACTTTGCTTACCGATGAAATTCCTAACTTCAAAAGTCACGAATATCTTCGACTTGTATTTACAGCGACTTTCTTTGCAGGAATCACTCAAATGGCACTTGGACTTTTAAGGCTCGGTTTCTTGATTGATTTCCTATCTCATGCTGCCATTGTTGGATTCATGGGTGGAGCTGCCATTACTATTGCACTCCAACAGCTTAAAGGTCTTCTTGGCATAAAACAATTCACTAAAAAAACTGATATTATTTCTGTCATGAGATCGGTTTTTAGTGCAGCCCACCACGGCTGGAATTGGGAGACAATAGTAATTGGAGTAGCATTCTTGGCTTTCCTTCTTGCAACAAAATATATTGCTAAGAAGAAAAATAATCTATTTTGGGTGGCTGCAATATCTCCTATGATATGTGTTATTGTCTCTACTTTTTGTGTTTACATTACAAGGGCTGACAAAAAGGGAGTAGCAATTGTGAAACATATAAGAAATGGTGTGAATCCGTCATCTGTTAATGAGATATATTTCAGTGGAAAATATTTAAGTGCTGGTATTAGGATCGGTGTGATATCTGGCATGGTAGCTCTCACGGAAGCTGTGGCCATTGGGAGAACATTTGCTGCTATGAAAGACTATTCAATAGATGGTAACAGAGAAATGGTGGCATTAGGAACAATGAACGTTATCGGTTCGATGACATCTTGTTATGTGGCTACCGGATCATTTTCGCGTTCGGCTGTGAACTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCATAGTTTTGTTGTTAACTCTGTTGGTAATTACACCGCTATTCAAGTACACTCCAAATGCAGTGCTTGCATCAATTATCATAACTGCTGTGATGAGCCTTATCGACATTAAAGCGGCTATTCTTCTATGGAAGGTTGACAAATTTGATTTTCTAGCTTGCATGGGAGCCTTCTTTGGTGTCATCTTCCAAAGTGTTGAGATTGGTCTTCTAATCGCAGTGGCAATATCTTTTGCGAAAATTCTCTTACAAGTGACGAGGCCAAGGACCGCGGTGCTTGGGAAGCTACCAGGGACAACTGTTTACAGAAACATTCTGCAGTATCCCAAAGCATCTCAGATTCCCGGCATGCTTATTATCAGGGTTGATTCTGCAATCTATTTCTCAAACTCCAACTACATCAAGGACAGAATATTGAAGTGGCTGGTAGATGAAGAGATACAAAGAACATCAAGTGAATTTCCTAGTATACAGTATCTCGTTGTTGAAATGTCGCCTGTTACTGATATTGATACTAGTGGCATTCATGCCTTTGAAGATTTACTCAAGAGCCTCGAGAAAAGAGATATTCAGCTTCTATTGGCGAATCCGGGACCTATTGTAATTGAGAAGCTTCATGCATCGATGTTATCGGGCTTAATCGGAGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTGCAACTTTTGGTCCAAAAGGTGCAGATTTATGA 1980 0.3914 MSHVLSDEAVANAMEEIKNNLSSRRPDDDNILPHIHKVSTPPKQSLFQDIKHNFNETFFSDDPFGKFKNQTGSRRFVLGLQTVFPIFEWGRYYNLKSFKGDLIAGLTIASLCIPQDIAYANLANLEPHYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLTDEIPNFKSHEYLRLVFTATFFAGITQMALGLLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGIKQFTKKTDIISVMRSVFSAAHHGWNWETIVIGVAFLAFLLATKYIAKKKNNLFWVAAISPMICVIVSTFCVYITRADKKGVAIVKHIRNGVNPSSVNEIYFSGKYLSAGIRIGVISGMVALTEAVAIGRTFAAMKDYSIDGNREMVALGTMNVIGSMTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSIVLLLTLLVITPLFKYTPNAVLASIIITAVMSLIDIKAAILLWKVDKFDFLACMGAFFGVIFQSVEIGLLIAVAISFAKILLQVTRPRTAVLGKLPGTTVYRNILQYPKASQIPGMLIIRVDSAIYFSNSNYIKDRILKWLVDEEIQRTSSEFPSIQYLVVEMSPVTDIDTSGIHAFEDLLKSLEKRDIQLLLANPGPIVIEKLHASMLSGLIGEDKIFLTVGDAVATFGPKGADL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10798 659 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Vifa1g10798 659 FunFam Sulfate transporter 31 509 655 - -
Vifa1g10798 659 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Vifa1g10798 659 PANTHER SULFATE TRANSPORTER 44 650 IPR001902 GO:0016020|GO:0055085
Vifa1g10798 659 Pfam STAS domain 530 648 IPR002645 -
Vifa1g10798 659 Pfam Sulfate permease family 98 477 IPR011547 GO:0016020
Vifa1g10798 659 Gene3D STAS domain 509 653 IPR036513 -
Vifa1g10798 659 NCBIfam sulfate permease 85 648 IPR001902 GO:0016020|GO:0055085
Vifa1g10798 659 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Vifa1g10798 659 SUPERFAMILY SpoIIaa-like 531 653 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10798 Vifa-Chr1 1815947253 1815950284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10798 33 658 Inorganic Solute Cotransporters AT1G22150 73.046 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10798 K17470 - gmx:100784124 1035.4