Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10796 ATGAGTCATGTTCTTAGTGATGAAGCTGTGGCAAATGCAATGGAGGAAATAAAAAACAATCTTTCTTCACGTAGACCTGATGATGATAATATTCTTCCACATATTCACAAAGTTTCAACTCCTCCTAAGCAATCACTTTTCCAAGATATCAAACATAATTTCAATGAAACATTCTTCTCAGATGACCCTTTTGGCAAGTTTAAGAATCAAACAGGATCAAGAAGGTTTGTTCTTGGACTCCAAACTGTTTTCCCGATTTTCGAGTGGGGAAGATATTACAATCTTAAAAGTTTCAAGGGGGATTTGATTGCTGGACTCACCATTGCAAGTCTTTGCATTCCTCAGGATATTGCGTATGCAAATCTTGCAAACTTGGAACCACATTATGGACTATATACAAGTTTTGTTGCTCCTCTTGTGTACGCTTTTATGGGAAGTTCAAGAGATATTGCTATAGGACCAGTAGCTGTTGTGTCTCTCTTGCTTGGCACTTTGCTTACCGATGAAATTCCTAACTTCAAAAGTCACGAATATCTTCGACTTGTATTTACAGCGACTTTCTTTGCAGGAATCACTCAAATGGCACTTGGACTTTTAAGGCTCGGTTTCTTGATTGATTTCCTATCTCATGCTGCCATTGTTGGATTCATGGGTGGAGCTGCCATTACTATTGCACTCCAACAGCTTAAAGGTCTTCTTGGCATAAAACAATTCACTAAAAAAACTGATATTATTTCTGTCATGAGATCGGTTTTTAGTGCAGCCCACCACAGCTGGAATTGGGAGACAATAGTAATTGGAGTAGCATTCTTGGCTTTCCTTCTTGCAACAAAATATATTGCTAAGAAGAAAAAGAATCTGTTTTGGGTGGCTGCAATATCTCCTATGATATGTGTTATTGTCTCTACTTTTTGTGTTTACATTACAAGGGCTGACAAGAAAGGAGTAGCAATTGTGAAACATATAAGAAATGGTGTGAATCCATCATCTGTTAATGAGATATATTTCAGTGGAAAATATTTAAGTGCTGGTATTAGGATCGGTGTGATATCTGGCATGGTAGCTCTCACGGAAGCTGTGGCCATTGGGAGAACATTTGCTGCTATGAAAGACTATTCAATAGATGGTAACAGAGAAATGGTGGCATTAGGAACAATGAACGTTATCGGTTCCATGACATCTTGTTATGTGGCTACCGGATCATTTTCGCGTTCGGCTGTGAACTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCATAGTTTTGTTGTTAACTCTGTTGGTAATTACACCGCTATTCAAGTACACTCCAAATGCAGTGCTTGCATCAATTATCATAACTGCTGTGATGAGCCTTATCGACATTAAAGCGGCTATTCTTCTATGGAAGGTTGACAAATTTGATTTTCTAGCTTGCATGGGAGCCTTCTTTGGTGTCATCTTCCAAAGTGTTGAGATTGGTCTTCTAATCGCAGTGGCAATATCTTTTGCGAAAATTCTCTTACAAGTGACGAGGCCAAGGACCGCGGTGCTTGGGAAGCTACCAGGGACAACTGTTTACAGAAACATTCTGCAGTATCCCAAAGCATCTCAGATTCCCGGCATGCTTATTATCAGGGTTGATTCTGCAATCTATTTCTCAAACTCCAACTACATCAAGGACAGAATATTGAAGTGGCTGGTAGATGAAGAGATACAAAGAACATCAAGTGAATTTCCTAGTATACAGTATCTCGTTGTTGAAATGTCGCCTGTTACTGATATTGATACTAGTGGCATTCATGCCTTTGAAGATTTACTCAAGAGCCTCGAGAAAAGAGATATTCAGCTTCTATTGGCGAATCCGGGACCTATTGTAATTGAGAAGCTTCATGCATCGATGTTATCGGGCTTAATCGGAGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTGCAACTTTTGGTCCAAAAGGTGCCGATTTATGA 1980 0.3914 MSHVLSDEAVANAMEEIKNNLSSRRPDDDNILPHIHKVSTPPKQSLFQDIKHNFNETFFSDDPFGKFKNQTGSRRFVLGLQTVFPIFEWGRYYNLKSFKGDLIAGLTIASLCIPQDIAYANLANLEPHYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLTDEIPNFKSHEYLRLVFTATFFAGITQMALGLLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGIKQFTKKTDIISVMRSVFSAAHHSWNWETIVIGVAFLAFLLATKYIAKKKKNLFWVAAISPMICVIVSTFCVYITRADKKGVAIVKHIRNGVNPSSVNEIYFSGKYLSAGIRIGVISGMVALTEAVAIGRTFAAMKDYSIDGNREMVALGTMNVIGSMTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSIVLLLTLLVITPLFKYTPNAVLASIIITAVMSLIDIKAAILLWKVDKFDFLACMGAFFGVIFQSVEIGLLIAVAISFAKILLQVTRPRTAVLGKLPGTTVYRNILQYPKASQIPGMLIIRVDSAIYFSNSNYIKDRILKWLVDEEIQRTSSEFPSIQYLVVEMSPVTDIDTSGIHAFEDLLKSLEKRDIQLLLANPGPIVIEKLHASMLSGLIGEDKIFLTVGDAVATFGPKGADL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10796 659 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Vifa1g10796 659 FunFam Sulfate transporter 31 509 655 - -
Vifa1g10796 659 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Vifa1g10796 659 Pfam Sulfate permease family 98 477 IPR011547 GO:0016020
Vifa1g10796 659 NCBIfam sulfate permease 85 648 IPR001902 GO:0016020|GO:0055085
Vifa1g10796 659 Pfam STAS domain 530 648 IPR002645 -
Vifa1g10796 659 Gene3D STAS domain 509 653 IPR036513 -
Vifa1g10796 659 PANTHER SULFATE TRANSPORTER 44 650 IPR001902 GO:0016020|GO:0055085
Vifa1g10796 659 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Vifa1g10796 659 SUPERFAMILY SpoIIaa-like 531 653 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10796 Vifa-Chr1 1815757606 1815760649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10796 33 658 Inorganic Solute Cotransporters AT1G22150 73.046 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10796 K17470 - gmx:100784124 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10796 1 1815757606 1815760649 Vifa1g10796 1 1815757606 1815760649 ECH