Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10790 ATGGATGTTTTATTTTCCTTAAACTCAAGCTCCAGCCTAATCGACATTTCAAAACCATACAAACATCATCATAACCTTCATCTCTCAAATAGCCATCAAAGACAACCTCATAGGTTACAGTTTCCTGTTTCATGCAGAGCCACAAAAAGTGTTTCTATTAATCCTAAGCTAGATGACGATGATGATGGAAACTTGTACAAGATACTATGTTTGAGTACTAAAACCGCAACAACAGATGAGATCAAGAGTGCTTATAGAAGAATGGCTCTCAAGTACCATCCTGATTTATGTCATGATGGTTTGAAGAAAGAGGAATCAACGAGGATGTTTGTAAAAGTGAATGAAGCTTATAAGATATTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTGTAAGTTATTGGGTTTGGGTGATTTGAGAAGAAGTAAATGGATGGAACAAGTTGCTGAGTTGAATAGAAGGTCTCATCAACGTAAGGGTGGTCAATCATGGGGTTCTAGAATGAGAGCCAAGAACAATATCAACAAACTTCATCAGAATTGCTAG 546 0.3663 MDVLFSLNSSSSLIDISKPYKHHHNLHLSNSHQRQPHRLQFPVSCRATKSVSINPKLDDDDDGNLYKILCLSTKTATTDEIKSAYRRMALKYHPDLCHDGLKKEESTRMFVKVNEAYKILSNPKLKEEYDCKLLGLGDLRRSKWMEQVAELNRRSHQRKGGQSWGSRMRAKNNINKLHQNC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10790 181 CDD DnaJ 64 122 IPR001623 -
Vifa1g10790 181 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vifa1g10790 181 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vifa1g10790 181 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vifa1g10790 181 SUPERFAMILY Chaperone J-domain 61 133 IPR036869 -
Vifa1g10790 181 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 29 173 - -
Vifa1g10790 181 Gene3D DnaJ domain 57 159 IPR036869 -
Vifa1g10790 181 SMART dnaj_3 63 125 IPR001623 -
Vifa1g10790 181 Pfam DnaJ domain 64 130 IPR001623 -
Vifa1g10790 181 ProSiteProfiles dnaJ domain profile. 64 133 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10790 Vifa-Chr1 1814889829 1814890374 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10790 66 131 C2H2 Transcription Factor Family AT1G74250 42.647 4.86e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10790 - - psat:127115916 259.61