Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10788 ATGGATGTTTTATTATCCTTAAACTCAAGCTCAAGCCTAATCAACATTTCAAAACCATACAAACATCATCATAACCTTCATCTCTCAAATAATGATCAAACAAAACCTCGCACGGTACAGTTTTCTGTTTCATGCAGAGCCACAAAAAGTGTTCCAATGAATCATAAACTAGATGATGGAAACTTGTACAAGACACTACGTTTGAGTTCCAAAACAGCAACAAAAGATGAGATAAAAAGAGCATATAGAAGAATGGCTCTTCAGTATCATCCTGATGTTTGTCATGATCGAACGAAGAAAGAGGAATCAACGAGGATATTTGTACAAGTTAATGAAGCTTATAAGACTCTGTCAAATCCAAAGCTTAAAGAAAAGTATGATTCAGAGTTGTTTGGTTTGGGTAATTTGAGAAGAAGTAAATGGATGGAACAAGTTGATGAATTGAATAGAAGATCTCAAAAAAGTAAGGGCGGTGCATCTTCATGGGGTTGTAGAATGAGAGCCATGAATAATAATAACATTAAAACCTTATAA 534 0.3427 MDVLLSLNSSSSLINISKPYKHHHNLHLSNNDQTKPRTVQFSVSCRATKSVPMNHKLDDGNLYKTLRLSSKTATKDEIKRAYRRMALQYHPDVCHDRTKKEESTRIFVQVNEAYKTLSNPKLKEKYDSELFGLGNLRRSKWMEQVDELNRRSQKSKGGASSWGCRMRAMNNNNIKTL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10788 177 CDD DnaJ 61 119 IPR001623 -
Vifa1g10788 177 PRINTS DnaJ domain signature 64 82 IPR001623 -
Vifa1g10788 177 PRINTS DnaJ domain signature 82 97 IPR001623 -
Vifa1g10788 177 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vifa1g10788 177 MobiDBLite consensus disorder prediction 149 177 - -
Vifa1g10788 177 Pfam DnaJ domain 61 127 IPR001623 -
Vifa1g10788 177 SUPERFAMILY Chaperone J-domain 56 131 IPR036869 -
Vifa1g10788 177 Gene3D DnaJ domain 48 155 IPR036869 -
Vifa1g10788 177 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 172 - -
Vifa1g10788 177 MobiDBLite consensus disorder prediction 154 177 - -
Vifa1g10788 177 SMART dnaj_3 60 122 IPR001623 -
Vifa1g10788 177 ProSiteProfiles dnaJ domain profile. 61 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10788 Vifa-Chr1 1814495766 1814496299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10788 63 128 C2H2 Transcription Factor Family AT1G74250 41.176 2.76e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10788 - - psat:127115916 237.654