Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10787 ATGGATGTTTTATTATCCTTAAACTCAAGCTCAAGCCTAATCAACATTTCAAAACCATACAGACATCATCATAACCTTCATCTCTCAAATAATCATCAAACAAAACCTCGCACAGTACAGTTTTCTGTTTCATGCAGAGCCACAAAAAGTGTTCCTATGAATCATAAACTAGATGATGGAAACTTGTACAAGATACTATGTTTGAGTTCCAAAACAGCAACAACAGATGAGATAAAAAGAGCATATAGAAGAATGGCTCTTCAGTATCATCCTGATGTTTGTCGTGATGGAACGAAGAAAGAGGAATCAACGAGGATATTTGTACAAGTTAATGAAGCTTATAAGACTCTGTCGAATCCAAAGCTTAAAGAAAAGTATGATTCAGAGTTGTTTGGTTTGGGTAATTTGAGAAGAAGTAAATGGATGGAACAAGTTGATGAATTGAATAGAAGATCTCAAAAAAGTAAGGGCGGTGCATCTTCATGGGGTTGTAGAATGAGAGCCATGAATAATAACTACTAG 522 0.3525 MDVLLSLNSSSSLINISKPYRHHHNLHLSNNHQTKPRTVQFSVSCRATKSVPMNHKLDDGNLYKILCLSSKTATTDEIKRAYRRMALQYHPDVCRDGTKKEESTRIFVQVNEAYKTLSNPKLKEKYDSELFGLGNLRRSKWMEQVDELNRRSQKSKGGASSWGCRMRAMNNNY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10787 173 CDD DnaJ 61 119 IPR001623 -
Vifa1g10787 173 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vifa1g10787 173 PRINTS DnaJ domain signature 64 82 IPR001623 -
Vifa1g10787 173 PRINTS DnaJ domain signature 82 97 IPR001623 -
Vifa1g10787 173 Pfam DnaJ domain 61 127 IPR001623 -
Vifa1g10787 173 SUPERFAMILY Chaperone J-domain 55 131 IPR036869 -
Vifa1g10787 173 Gene3D DnaJ domain 47 155 IPR036869 -
Vifa1g10787 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 21 171 - -
Vifa1g10787 173 ProSiteProfiles dnaJ domain profile. 61 130 IPR001623 -
Vifa1g10787 173 SMART dnaj_3 60 122 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10787 Vifa-Chr1 1814308214 1814308735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10787 63 128 C2H2 Transcription Factor Family AT1G74250 42.647 5.42e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10787 - - psat:127115916 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10787 1 1814308214 1814308735 Vifa1g10794 1 1815488802 1815489347 PCT