Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10786 ATGGATGTTTTATTTTCCTTAAACTCAAGCTCCAGCCTTATCAACATTTCAAAACCATTCAAACATCATCATAACCTTCATCTCTTAAATAATCATCAAAGACAGCCTCGTACAGTACACTTTTCTGTCTCATGCAGAGCCACAAAAAGTGTTCCAATTAATCATAAACTAGAGGATGATGATGGAAACTTGTACAAGATACTATGTTTGAGTACTAAAACCGCAACAACAGATGAGATCAAGAGTGCTTATAGAAGAATGGCTCTCAAGTACCATCCTGATGTATGTCATGATGGTTTGAAGAAAGAGGAATCAACGAGGATGTTTGTAAAAGTGAATGAAGCTTATAAGATATTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTGTAAGTTATTGGGTTTGGGCGATTTGAGAAGAAGTAAATGGATGGAACAAGTTGTTGAATTGAATAGAAGGTCTCATCAACGTAAGGGTGGTCAATCATGGGGTTCTAGAATGAGAGCCAAGAACAATATCAACAAAGATGATCATAATACCTAG 543 0.3591 MDVLFSLNSSSSLINISKPFKHHHNLHLLNNHQRQPRTVHFSVSCRATKSVPINHKLEDDDGNLYKILCLSTKTATTDEIKSAYRRMALKYHPDVCHDGLKKEESTRMFVKVNEAYKILSNPKLKEEYDCKLLGLGDLRRSKWMEQVVELNRRSHQRKGGQSWGSRMRAKNNINKDDHNT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10786 180 CDD DnaJ 63 121 IPR001623 -
Vifa1g10786 180 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 173 - -
Vifa1g10786 180 MobiDBLite consensus disorder prediction 153 180 - -
Vifa1g10786 180 Pfam DnaJ domain 63 129 IPR001623 -
Vifa1g10786 180 ProSiteProfiles dnaJ domain profile. 63 132 IPR001623 -
Vifa1g10786 180 Gene3D DnaJ domain 49 157 IPR036869 -
Vifa1g10786 180 PRINTS DnaJ domain signature 84 99 IPR001623 -
Vifa1g10786 180 PRINTS DnaJ domain signature 66 84 IPR001623 -
Vifa1g10786 180 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vifa1g10786 180 SUPERFAMILY Chaperone J-domain 59 132 IPR036869 -
Vifa1g10786 180 SMART dnaj_3 62 124 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10786 Vifa-Chr1 1814297219 1814297761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10786 65 129 C2H2 Transcription Factor Family AT1G74250 43.284 5.43e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10786 - - psat:127115916 273.092