Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10783 ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGTGGAAAGAGGAGCCAAACCTTGCTAGCTACTGCCATTGGAAGCAAAGTTGGTGTTGCAGCTGCTAGTCCTAAAAGACTTATCGTTGCTGCTGCTGCTTCTGCACCAAAGAAATCATGGATCCCTGGTGTTAGATTCGGTGGAAACCTCGTCGACCCCGAATGGCTCGATGGATCGCTACCAGGTGACTTTGGTTTCGACCCTCTAGGCCTTGGCAAGGACCCGGCATTTCTCAAATGGTACAGAGAAGCCGAGCTCATTCATGGTAGATGGGCAATGGCTGCAGTTCTAGGTATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCGTGGTTCGAGGCTGGAGCTGACCCCAACGCGATTGCTCCATTCTCATTCGGTACTCTTCTAGGCACACAGTTGATTCTCATGGGATGGGTAGAGAGCAAGAGATGGGTTGATTTCTTCAACCCGGACTCACAGTCGGTCGAATGGGCCACTCCATGGTCTAAAACAGCTGAGAACTTCGTCAATTCAACCGGAGAACAAGGCTACCCAGGTGGAAAATTCTTCGATCCATTGTCACTCGCTGGTACCATCCAAAATGGAGTTTACATTCCAGATACAGACAAGTTAGAGAGATTGAAACTCGCTGAAATTAAGCATGCTAGGCTCGCTATGTTAGCTATGCTTATTTTCTACTTTGAAGCTGGACAAGGGAAGACTCCACTTGGCGCTCTTGGCTTGTAA 783 0.4879 MAAATSGAVLNGLGSSFLSGGKRSQTLLATAIGSKVGVAAASPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFVNSTGEQGYPGGKFFDPLSLAGTIQNGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10783 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 56 258 IPR001344 GO:0009765|GO:0016020
Vifa1g10783 260 Gene3D Chlorophyll a/b binding protein domain 72 259 - -
Vifa1g10783 260 FunFam Chlorophyll a-b binding protein, chloroplastic 72 259 - -
Vifa1g10783 260 Pfam Chlorophyll A-B binding protein 72 248 IPR022796 -
Vifa1g10783 260 SUPERFAMILY Chlorophyll a-b binding protein 69 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10783 Vifa-Chr1 1813423040 1813424088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10783 1 260 Chloroplast and Mitochondria Gene Families AT1G15820 82.308 1.78e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10783 K08917 - gmx:100500118 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10783 1 1813423040 1813424088 Vifa1g10783 1 1813423040 1813424088 ECH
Vifa1g10783 1 1813423040 1813424088 Vifa1g10783 1 1813423040 1813424088 PCT